Yu Yang Y - OmicsDI

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Unknown (12295)
Proteomics (375)
Transcriptomics (99)
Metabolomics (45)
Genomics (28)
Multiomics (7)
Other (1)

Organisms

Homo sapiens (178)
Mus musculus (50)
Arabidopsis thaliana (8)
Zea mays (5)
Rattus norvegicus (5)
Drosophila melanogaster (5)
Severe acute respiratory syndrome coronavirus 2 (5)
Yersinia pestis (4)
Saccharomyces cerevisiae (4)
Gallus gallus (3)
Oryza sativa (2)
Haloferax volcanii (2)
Enterococcus faecalis (2)
Sus scrofa domesticus (2)
Yersinia pestis CO92 (2)
Oryctolagus cuniculus (2)
Rattus rattus (2)
Rhodococcus opacus (1)
Brassica oleracea (1)
Deinococcus gobiensis (1)
Tomato yellow leaf curl China virus (1)
Bombyx mori (1)
Aspergillus nidulans (1)
Macaca mulatta (1)
Heterocephalus glaber (1)
Glycine max (1)
Triticum aestivum (1)
Candida albicans (1)
Sus scrofa (1)
Danio rerio (1)

Organisms

Haloferax volcanii (1)
Mus musculus (1)

Repository

pride (179)
iProX (166)
biostudies-arrayexpress (107)
MetaboLights (44)
EGA (17)
PeptideAtlas (15)
MassIVE (14)
ENA (2)
geo (1)
GNPS (1)
GPMDB (1)
jPOST (1)

Tissue

Cell culture (47)
Brain (14)
Plasma Non-glyco (11)
Epithelial cell (9)
Liver (9)
Kidney (8)
Plant cell (7)
Whole body (7)
Permanent cell line cell (7)
Lung (6)
Heart (5)
Stem cell (5)
Testis (5)
Leaf (5)
Macrophage (4)
Spleen (4)
Blood (4)
Others (3)
Kidney cell (3)
Flower (3)
Embryonic stem cell (3)
Hepatocyte (3)
Peritoneal macrophage (2)
Byssus (2)
Epididymal white adipose tissue (2)
Placenta (2)
Gastric adenocarcinoma cell (2)
Embryo (2)
HeLa cell (2)
Photosynthetic cell (2)

Disease

Disease free (6)
Breast cancer (3)
Kidney cancer (3)
Disease (2)
Multiple myeloma (2)
Lung cancer (2)
Colon cancer (2)
Not Available (1)
Neuropathic pain (1)
Cognitive impairment (1)
Carcinoma (1)
Diffuse large B-cell lymphoma (1)
Idiopathic pulmonary fibrosis (1)
Cerebrovascular disease (1)
Ovarian cancer (1)
Nephrolithiasis (1)
Pre-eclampsia (1)
Lung carcinoma (1)
Non-small cell lung carcinoma (1)
IgA glomerulonephritis (1)
Severe acute respiratory syndrome (1)
Gastric adenocarcinoma (1)
Neuroblastoma (1)
Head and neck squamous cell carcinoma (1)
Alzheimer's disease (1)
Renal cell carcinoma (1)
Liver cancer (1)
COVID-19 (1)
Type 2 diabetes mellitus (1)
Acute leukemia (1)

Technology Type

Mass Spectrometry (179)
Shotgun proteomics (79)
Mass spectrometry (37)
Bottom-up proteomics (32)
Data-dependent acquisition (21)
Gel-based experiment (16)
Affinity purification coupled with mass spectrometry proteomics (14)
Top-down proteomics (10)
SWATH MS (7)
Data-independent acquisition (7)
Mass spectrometry assay (5)
Proteogenomics (4)
Chemical cross-linking coupled with mass spectrometry proteomics (4)
Illumina HiSeq 2000, ILLUMINA (2)
NMR spectroscopy (2)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000 (1)
Mass spectrometry imaging (1)
RNA mass spectrometry (1)
Immunopeptidomics (1)
DiaPASEF (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (20)
Liquid Chromatography MS - negative - reverse phase (20)
TripleTOF 5600 (12)
Liquid Chromatography MS - negative - hilic (8)
Liquid Chromatography MS - positive - hilic (8)
MS:1000031 (3)
LTQ Orbitrap Velos (3)
Q Exactive (3)
LTQ Orbitrap Elite (3)
Liquid Chromatography MS - negative (3)
Liquid Chromatography MS - positive (3)
Illumina HiSeq 4000 (2)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (2)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (2)
6540 Q-TOF LC/MS (Agilent) (2)
Liquid Chromatography MS - alternating - hilic (2)
Liquid Chromatography MS - alternating - reverse phase (2)
Illumina Genome Analyzer II (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 2000 (1)
LTQ FT (1)
MaXis (1)
Instrument (1)
Q Exactive mass spectrometer (Thermo Scientific) (1)
Velos Plus (1)
Orbitrap Ascend (1)
Orbitrap Astral (1)
LTQ Orbitrap Velos Pro (1)
Orbitrap Eclipse (1)
Q Exactive Plus (1)

Publication Date

2022 (67)
2025 (56)
2026 (44)
2023 (40)
2021 (35)
2024 (30)
2015 (24)
2013 (22)
2014 (19)
2010 (18)
2020 (18)
2011 (15)
2019 (14)
2016 (13)
2012 (10)
2018 (7)
2009 (6)
2017 (6)
2005 (3)
2008 (2)

UNIPROT ID/AC

Q969Q0 (14)
Q9Y3U8 (14)
Q9Y224 (14)
Q9UN86-2 (14)
Q9UN86 (14)
Q9H0A0 (14)
Q9BQ39 (14)
Q8N3C0 (14)
Q86V81 (14)
Q7L2E3-2 (14)
Q7L2E3 (14)
Q6FG99 (14)
Q96SB4 (14)
Q9Y3I0 (14)
Q9P2E9 (14)
Q92841 (14)
Q92804-2 (14)
Q92804 (14)
Q92499 (14)
Q9NX58 (14)
Q9NR30 (14)
Q9H361 (14)
Q9H307 (14)
Q9BQG0 (14)
Q8NCA5 (14)
Q9UQ80 (14)
Q9UNX3 (14)
Q96E39 (14)
Q15185-4 (14)
Q15185 (14)

ENSEMBL ID

ENSG00000170477 (12)
ENSG00000247315 (7)
ENSG00000147251 (4)

CHEBI ID

CHEBI:17750 (18)
CHEBI:16704 (18)
CHEBI:16919 (18)
CHEBI:17154 (17)
CHEBI:15354 (17)
CHEBI:17368 (17)
CHEBI:16737 (16)
CHEBI:17895 (16)
CHEBI:16393 (15)
CHEBI:16335 (15)
CHEBI:16015 (15)
CHEBI:16040 (14)
CHEBI:17015 (14)
CHEBI:15727 (14)
CHEBI:15891 (14)
CHEBI:16359 (14)
CHEBI:17351 (14)
CHEBI:18132 (13)
CHEBI:16708 (13)
CHEBI:16750 (13)
CHEBI:15741 (13)
CHEBI:16196 (13)
CHEBI:17509 (13)
CHEBI:7916 (13)
CHEBI:16467 (13)
CHEBI:17203 (13)
CHEBI:18183 (13)
CHEBI:24813 (13)
CHEBI:17405 (13)
CHEBI:16347 (13)

Metabolite Name

Creatine (12)
Betaine (11)
Hypoxanthine (11)
Taurine (10)
Cholic acid (10)
Adenosine (10)
Uridine (10)
Uracil (9)
Choline (9)
Cytosine (9)
Creatinine (9)
L-Tyrosine (9)
Valine (8)
Thymine (8)
Nicotinamide (8)
Adenine (8)
Guanosine (8)
L-Carnitine (8)
Stearoylcarnitine (7)
Sphingosine (7)
Phytosphingosine (7)
Acetylcholine (7)
L-Palmitoylcarnitine (7)
Spermidine (7)
Proline (7)
Cytidine (7)
Glycerophosphocholine (7)
N6,N6,N6-Trimethyl-L-lysine (6)
Leucine (6)
Genistein (6)

First Public Date

2014 (2)

Modification

4x(2)H labeled dimethylated L-lysine (2)

Study type

Transcription profiling by array (44)
RNA-seq of coding RNA (33)
ChIP-seq (6)
RNA-seq of non coding RNA (4)
Methylation profiling by high throughput sequencing (3)
ChIP-chip by tiling array (2)
Transcription profiling by tiling array (2)
ChIP-chip by array (2)
Comparative genomic hybridization by array (2)
Other (2)
Methylation profiling by array (2)
Transcription profiling by SAGE (1)
Unknown experiment type (1)
High-throughput sequencing (1)
Genotyping by array (1)
Transcription profiling by RT-PCR (1)

Release Date

2025 (2064)
2022 (1743)
2024 (1624)
2023 (1571)
2021 (1321)
2020 (890)
2019 (630)
2018 (559)
2017 (440)
2016 (361)
2026 (285)
2015 (267)
2014 (221)
2013 (125)
2012 (77)
2011 (71)
2010 (59)
2009 (33)
2008 (25)
2007 (12)
2005 (7)
2002 (5)
2006 (4)
2004 (4)
2003 (2)
2000 (1)
1999 (1)

Lab affiliation

State Key Laboratory of Oncology in South China, Collaborative Innovation Center for Cancer Medicine, Guangdong Key Laboratory of Nasopharyngeal Carcinoma Diagnosis and Therapy, Sun Yat-sen University Cancer Center, Guangzhou 510060, China (3)
State Key Laboratory of Oncology in South China, Collaborative Innovation Center for Cancer Medicine, Sun Yat-sen University Cancer Center, Guangzhou, 510060, China (3)
Key Laboratory of Functional Protein Research of Guangdong Higher Education Institutes, Institute of Life and Health Engineering, College of Life Science and 9 Technology, Jinan University, Guangzhou 510632, China (2)
Division of Life Science, The Hong Kong University of Science and Technology, Hong Kong SAR, China (2)
State Key Laboratory for Innovation and Transformation of Luobing Theory; Key Laboratory of Cardiovascular Remodeling and Function Research, Chinese Ministry of Education, Chinese National Health Commission and Chinese Academy of Medical Sciences; Department of Cardiology, Qilu Hospital of Shandong University, Jinan, China (2)
CAS Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai 200032, China (2)
Guangdong Pharmaceutical University (2)
CAS Key Laboratory of Tropical Marine Bio-resources and Ecology and Guangdong Provincial Key Laboratory of Applied Marine Biology, South China Sea Institute of Oceanology, Chinese Academy of Science. Guangzhou, China (2)
Center for Stem Cell Biology and Tissue Engineering, Key Laboratory for Stem Cells and Tissue Engineering, Ministry of Education, Sun Yat-sen University, Guangzhou, Guangdong, China. (2)
Institut für Mikrobiologie, Universität Greifswald, Felix-Hausdorff-Str. 8, 17489 Greifswald (2)
Department of Structural Biology and Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA (2)
Center for Translational Medicine, The Affiliated Zhangjiagang Hospital of Soochow University, Suzhou Medical College of Soochow University (2)
Institute of Reproductive Medicine, Medical School, Nantong University, Nantong 226001, China (2)
Institute of Immunology and Department of Orthopaedics of the Second Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, Zhejiang 310058, China (2)
Department of Chemistry, University of California, Riverside (2)
Department of Chemistry, University of California Riverside (2)
State Key Laboratory of Medical Molecular Biology, Department of Biochemistry and Molecular Biology, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences, School of Basic Medicine Peking Union Medical College, Beijing 100005, China (2)
State Key Laboratory of Medical Molecular Biology, Department of Biochemistry and Molecular Biology, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences, School of Basic Medicine Peking Union Medical College, Beijing 100005, China. (2)
The Fifth Affiliated Hospital of Guangzhou Medical University (2)
Ocean University of China (2)
westlake.edu.cn (2)
The Institute of Cancer Research (2)
Department of Structural Biology, St. Jude Children's Research Hospital, Memphis, TN, USA (1)
Department of Nephrology, Guangdong Provincial People’s Hospital, Guangdong Academy of Medical Sciences, Guangzhou, China;Guangdong-Hong Kong Joint Laboratory on Immunological and Genetic Kidney Diseases; Guangzhou, China. (1)
1Department of Pathophysiology, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, Shanghai Jiao Tong University School of Medicine (SJTU-SM), Shanghai 200025, China. 2Institute of Health Sciences, Shanghai Institutes for Biological Sciences of Chinese Academy of Sciences and SJTU-SM, Shanghai 200025, China. (1)
Institute of Bioengineering, College of Chemical and Biological Engineering, Zhejiang University, Hangzhou, Zhejiang 310027, China (1)
Guangxi Disease Prevention and Control Center (1)
lushuaiyao's lab, Chinese academic and medical colledge&peking union medical colledge, institute of medical biology (kunming, Yun nan Province) (1)
School of Life Sciences, Hubei University, Wuhan 430062, China (1)
Department of Chemistry, Sun's Lab, Michigan State University, USA (1)

Tags

xref:PubMed:16098828 (1)

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Validation of the Anticolitis Efficacy of the Jian-Wei-Yu-Yang Formula.

Not available

S-EPMC9451982 | biostudies-literature

Qian Yang Yu Yin Granule Improves Renal Injury of Hypertension by Regulating Metabolic Reprogramming Mediated by HIF-1α/PKM2 Positive Feedback Loop.

Not available

S-EPMC8218631 | biostudies-literature

Metabolite signatures of diverse Camellia sinensis tea populations

Tea plants (Camellia sinensis) present an excellent system to study evolution and diversification of specialized metabolites due to their abundance in classes, numbers and contents. A large number of tea cultivars have been cultivated throughout the world not only because of their adaption to differ...

2020-10-05 | MTBLS1405 | MetaboLights

Facilitation of MrgprD by TRP-A1 promotes neuropathic pain.

Not available

S-EPMC6988841 | biostudies-literature

Subcellular localization of mutated β-catenins with different incidences of cis-peptide bonds at the Xaa246-P247 site in HepG2 cells.

Not available

S-EPMC6497428 | biostudies-literature

Sperm but not oocyte DNA methylome is inherited by zebrafish early embyros

5-methylcytosine is a major epigenetic modification sometimes called "the fifth nucleotide". However, our knowledge of how offspring inherit the DNA methylome from parents is limited. We generated nine single-base resolution DNA methylomes including zebrafish gametes and early embryos. The...

ORGANISM(S): Danio rerio

2013-05-20 | E-GEOD-44075 | biostudies-arrayexpress

Differentially expressed proteins between WT Y. pestis and ΔhmwC

ORGANISM(S): Yersinia Pestis Co92

PXD042928 |

Molecular mechanism of Dang-Shen-Yu-Xing decoction against Mycoplasma bovis pneumonia based on network pharmacology, molecular docking, molecular dynamics simulations and experimental verification.

Not available

S-EPMC11458528 | biostudies-literature

Genome-wide survey of YY1 targets in C2C12 cells by High-throughput sequencing

By applying ChIP-seq, we generated genome-wide maps of YY1 in skeletal myoblasts and myotubes. We found that YY1 binds to 1820 confident target with a large portion residing in the intergenic regions. In addition, YY1 was found to activate many loci, and there is no significant overlap between YY1 a...

ORGANISM(S): Mus musculus

2013-08-15 | E-GEOD-45875 | biostudies-arrayexpress

Effects of the lncRNA NBR2 on the proliferation and autophagy of breast cancer cells under starvation conditions.

Not available

S-EPMC11442952 | biostudies-literature

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