Yu Zhu Z - OmicsDI

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Unknown (4521)
Proteomics (147)
Metabolomics (30)
Transcriptomics (26)
Genomics (9)
Multiomics (3)

Organisms

Homo sapiens (88)
Mus musculus (49)
Arabidopsis thaliana (7)
Zea mays (4)
Oryza sativa (4)
Severe acute respiratory syndrome coronavirus 2 (3)
Glycine max (3)
Plasmodium falciparum 3D7 (3)
Saccharomyces cerevisiae (2)
Rattus norvegicus (2)
Rhodococcus opacus (1)
Macaca mulatta (1)
Oryza sativa Japonica Group (1)
Ganoderma lucidum G.260125-1 (1)
Lycium barbarum (1)
Mycolicibacterium smegmatis MC2 155 (1)
Oryctolagus cuniculus (1)
Rattus rattus (1)
Spinacia oleracea (1)
Stenotrophomonas sp. SY1 (1)
Artemisia annua (1)
Bombyx mori (1)
Camellia sinensis (1)
Ctenopharyngodon idella (1)
Danio rerio (1)
Petunia x hybrida (1)
Solanum lycopersicum (1)
Sus scrofa domesticus (1)

Organisms

Mus musculus (1)

Repository

pride (71)
iProX (67)
MetaboLights (30)
biostudies-arrayexpress (28)
EGA (5)
MassIVE (4)
PeptideAtlas (3)
geo (1)
jPOST (1)
PAXDB (1)
ENA (1)

Tissue

Cell culture (18)
Plant cell (6)
B cell (5)
Epithelial cell (5)
Liver (4)
Stem cell (4)
Others (3)
Brain (3)
Leaf (3)
Macrophage (3)
Blood (2)
Blood cell (2)
Blood plasma (2)
Gastric adenocarcinoma cell (2)
Permanent cell line cell (2)
Testis (2)
Whole body (2)
B-cell lymphoma cell (1)
Blood serum (1)
Cell line cell (1)
Cell suspension culture (1)
Cerebral cortex glial cell (1)
Chondrocyte (1)
Colon (1)
Colon epithelial cell (1)
Embryo (1)
Embryonic stem cell (1)
Epithelial cell of lung (1)
Epithelial cell of prostate (1)
Flower (1)

Disease

Breast cancer (5)
Disease free (5)
Colon cancer (3)
Acute leukemia (2)
Brain cancer (2)
Cervix carcinoma (2)
Malignant neoplasm of ovary (2)
Prostate adenocarcinoma (2)
Alzheimer's disease (1)
Beta thalassemia (1)
Brain glioblastoma multiforme (1)
Gastric adenocarcinoma (1)
IgA glomerulonephritis (1)
Kidney cancer (1)
Lung cancer (1)
Lung mixed small cell and squamous cell carcinoma (1)
Lymphoma (1)
Neuropathic pain (1)
Non-small cell lung carcinoma (1)
Prostate cancer (1)
Renal cell carcinoma (1)
Skin amelanotic melanoma (1)

Technology Type

Mass Spectrometry (71)
Shotgun proteomics (33)
Mass spectrometry (26)
Bottom-up proteomics (11)
Gel-based experiment (9)
Chemical cross-linking coupled with mass spectrometry proteomics (8)
SWATH MS (5)
Affinity purification coupled with mass spectrometry proteomics (4)
Data-dependent acquisition (4)
Mass spectrometry assay (3)
Data-independent acquisition (3)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
NMR spectroscopy (1)
Proteogenomics (1)
SRM/MRM (1)
Top-down proteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (15)
Liquid Chromatography MS - negative - reverse phase (12)
LTQ Orbitrap Elite (3)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (2)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (2)
Liquid Chromatography MS - alternating - reverse phase (2)
Liquid Chromatography MS - negative (2)
Liquid Chromatography MS - positive (2)
Illumina NovaSeq 6000 (1)
LTQ Orbitrap Velos (1)
Orbitrap Eclipse (1)
Q Exactive (1)
TripleTOF 5600 (1)
6530 Q-TOF LC/MS (Agilent) (1)
API 4000 QTRAP (AB Sciex) (1)
Agilent 5975E GC/MSD (Agilent) (1)
Bruker (1)
Gas Chromatography MS - (1)
Gas Chromatography MS - Positive (GC-MS (Positive)) (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - Negative (LC-MS (NEG)) (1)
Liquid Chromatography MS - Positive (LC-MS (POS)) (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)
Quattro micro API (Waters) (1)
QExactive (1)

Publication Date

2024 (32)
2022 (28)
2026 (22)
2025 (22)
2023 (20)
2021 (20)
2020 (12)
2019 (9)
2015 (8)
2013 (7)
2014 (6)
2018 (5)
2017 (5)
2012 (4)
2009 (3)
2010 (1)
2008 (1)
2016 (1)

UNIPROT ID/AC

A0A076U3R7_BRANA (1)
A0A078BTQ3_BRANA (1)
A0A078BUF9_BRANA (1)
A0A078BWL0_BRANA (1)
A0A078BXJ1_BRANA (1)
A0A078C354_BRANA (1)
A0A078C5F6_BRANA (1)
A0A078C7R2_BRANA (1)
A0A078C9T4_BRANA (1)
A0A078CAM5_BRANA (1)
A0A078CAN8_BRANA (1)
A0A078CBC4_BRANA (1)
A0A078CJJ5_BRANA (1)
A0A078CJY2_BRANA (1)
A0A078CLL9_BRANA (1)
A0A078CMA6_BRANA (1)
A0A078CUQ3_BRANA (1)
A0A078CWM8_BRANA (1)
A0A078CXF9_BRANA (1)
A0A078CXX6_BRANA (1)
A0A078CYC7_BRANA (1)
A0A078D2R6_BRANA (1)
A0A078D4W1_BRANA (1)
A0A078D634_BRANA (1)
A0A078D7G6_BRANA (1)
A0A078D911_BRANA (1)
A0A078D939_BRANA (1)
A0A078DAQ0_BRANA (1)
A0A078DAZ5_BRANA (1)
A0A078DBS4_BRANA (1)

ENSEMBL ID

ENSG00000147251 (3)
ENSG00000170477 (3)
ENSG00000247315 (3)

CHEBI ID

CHEBI:16828 (10)
CHEBI:17351 (10)
CHEBI:30769 (10)
CHEBI:16015 (9)
CHEBI:16704 (9)
CHEBI:16914 (9)
CHEBI:17203 (9)
CHEBI:17895 (9)
CHEBI:28875 (9)
CHEBI:15756 (8)
CHEBI:16040 (8)
CHEBI:16196 (8)
CHEBI:17568 (8)
CHEBI:17596 (8)
CHEBI:18089 (8)
CHEBI:28716 (8)
CHEBI:15603 (7)
CHEBI:15741 (7)
CHEBI:15971 (7)
CHEBI:16335 (7)
CHEBI:16349 (7)
CHEBI:16467 (7)
CHEBI:16919 (7)
CHEBI:17154 (7)
CHEBI:17191 (7)
CHEBI:17295 (7)
CHEBI:17368 (7)
CHEBI:17750 (7)
CHEBI:18176 (7)
CHEBI:30805 (7)

Metabolite Name

Creatine (9)
Cytosine (8)
Uridine (8)
Betaine (7)
L-Proline (7)
Uracil (7)
L-Carnitine (6)
L-Tryptophan (6)
Linoleic acid (6)
Salicylic acid (6)
Acetylcholine (5)
Adenine (5)
Adenosine (5)
Choline (5)
Creatinine (5)
Cytidine (5)
Glycerophosphocholine (5)
Guanosine (5)
Indole (5)
Inosine (5)
L-Arginine (5)
L-Citrulline (5)
L-Histidine (5)
L-Methionine (5)
L-Tyrosine (5)
Nicotinamide (5)
Oleic acid (5)
Thymidine (5)
Thymine (5)
Urocanic acid (5)

First Public Date

2020 (1)

Modification

4x(2)H labeled dimethylated L-lysine (2)

Study type

RNA-seq of coding RNA (13)
Transcription profiling by array (11)
ChIP-seq (2)
Other (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2025 (792)
2022 (664)
2024 (597)
2023 (579)
2021 (467)
2020 (314)
2019 (224)
2018 (173)
2017 (159)
2026 (134)
2015 (113)
2016 (110)
2014 (75)
2013 (48)
2012 (27)
2011 (19)
2009 (16)
2008 (12)
2010 (11)
2007 (7)
2002 (3)
2006 (2)
2005 (2)
2004 (1)

Lab affiliation

Department of Immunology, College of Basic Medical Science, China Medical University, Shenyang, Liaoning 110122, China (3)
Shanghaitech University (3)
State Key Laboratory of Oncology in South China, Collaborative Innovation Center for Cancer Medicine, Guangdong Key Laboratory of Nasopharyngeal Carcinoma Diagnosis and Therapy, Sun Yat-sen University Cancer Center, Guangzhou 510060, China (3)
Division of Life Science, The Hong Kong University of Science and Technology, Hong Kong SAR, China (2)
ETH Zurich (2)
First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China (2)
Key Laboratory of Molecular Epigenetics of Ministry of Education (MOE), Northeast Normal University, Changchun, China. (2)
Zhejiang University (2)
westlake.edu.cn (2)
1, Department of Biology, Institute of Molecular Systems Biology, ETH, Zurich, Switzerland 2, Faculty of Science, University of Zurich, Zurich, Switzerland (1)
Biotechnological Institute of Chinese Materia Medica, Jinan University, Guangzhou 511443, China (1)
Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing 100081, China (1)
Chair, Cancer Biology & Genetics Program, SKI; Chair, Geoffrey Beene Cancer Research Center; Investigator, Howard Hughes Medical Institute; (1)
China Pharmaceutical University (1)
Chinese PLA General Hospital (1)
College of Biology, Hunan University (1)
College of Biomedical Engineering & Instrument Science,Zhejiang University (1)
College of Veterinary Medicine, Shaanxi Centre of Stem Cells Engineering & Technology, Northwest A&F University, Yangling, Shaanxi, 712100, China (1)
Dalian Institute of Chemical Physics, CAS (1)
Department of Analytical Chemistry and CAS Key Laboratory of Receptor Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences (1)
Department of Biology, Genetics Institute, Plant Molecular and Cellular Biology Program, Interdisciplinary Center for Biotechnology Research, University of Florida, Gainesville, FL, USA (1)
Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, Switzerland Faculty of Science, University of Zurich, Switzerland (1)
Department of Clinical Laboratory Medicine, Shanghai Tenth People’s Hospital of Tongji University, Shanghai, 200072, China (1)
Department of Medical Microbiology and Immunology, the University of California Davis Schoolof Medicine, 1275 Health Sciences Drive, Tupper Hall 3134, Davis, CA 95616, USA. Tel: 530-754-3074 (1)
Department of Medicine, UF Health Cancer Center, University of Florida, Gainesville, FL 32610, USA. (1)
Department of Nephrology, Guangdong Provincial People’s Hospital, Guangdong Academy of Medical Sciences, Guangzhou, China;Guangdong-Hong Kong Joint Laboratory on Immunological and Genetic Kidney Diseases; Guangzhou, China. (1)
Division of Endocrinology, Department of Internal Medicine, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China. (1)
Division of Life Science, The Hong Kong University of Science and Technology (1)
Fujian Agriculture and Forestry University (1)
Guangdong Key Laboratory for Innovative Development and Utilization of Forest Plant Germplasm, College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou 510642, China (1)

Tags

xref:PubMed:36635563 (1)

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Metabolomics Strategy Using High Resolution Mass Spectrometry Reveals Novel Biomarkers and Pain-Relief Effect of Traditional Chinese Medicine Prescription Wu-Zhu-Yu Decoction Acting on Headache Modelling Rats.

Not available

S-EPMC6149820 | biostudies-literature

Metabolite signatures of diverse Camellia sinensis tea populations

Tea plants (Camellia sinensis) present an excellent system to study evolution and diversification of specialized metabolites due to their abundance in classes, numbers and contents. A large number of tea cultivars have been cultivated throughout the world not only because of their adaption to differ...

2020-10-05 | MTBLS1405 | MetaboLights

Absence of tmRNA Increases the Persistence to Cefotaxime and the Intercellular Accumulation of Metabolite GlcNAc in Aeromonas veronii

Bacterial persisters are a small proportion of phenotypically heterogeneous variants with the transient capability to survive in high concentrations of antibiotics, causing recurrent infections in both human and aquatic animals. Transfer-messenger RNA (tmRNA), which was encoded by the ssrA ge...

2021-10-18 | MTBLS1182 | MetaboLights

Mechanism of interventional effect and targets of Zhuyu Pill in regulating and suppressing colitis and cholestasis

Zhuyu pill (ZYP) is a traditional Chinese medicine prescription composed of two drugs, Coptis chinensis Franch. and Tetradium ruticarpum (A. Jussieu) T. G. Hartley, and is commonly used in the clinical treatment of diseases of the digestive system. However, the mechanism underly...

2022-11-02 | MTBLS4980 | MetaboLights

NK Cell-Dependent Growth Inhibition of Lewis Lung Cancer by Yu-Ping-Feng, an Ancient Chinese Herbal Formula.

Not available

S-EPMC4789500 | biostudies-literature

Facilitation of MrgprD by TRP-A1 promotes neuropathic pain.

Not available

S-EPMC6988841 | biostudies-literature

Mechanisms and molecular targets of the Yu-Ping-Feng powder for allergic rhinitis, based on network pharmacology.

Not available

S-EPMC8415986 | biostudies-literature

Identification of the Active Constituents and Significant Pathways of Shen-qi-Yi-zhu Decoction on Antigastric Cancer: A Network Pharmacology Research and Experimental Validation.

Not available