Yu Zhuang Z - OmicsDI

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Unknown (576)
Proteomics (13)
Transcriptomics (2)
Metabolomics (2)
Genomics (1)

Organisms

Homo sapiens (9)
Brassica oleracea (1)
Rattus norvegicus (1)
Staphylococcus aureus (1)
Mus musculus (1)
Saccharomyces cerevisiae (1)

Repository

pride (7)
iProX (3)
MassIVE (3)
biostudies-arrayexpress (2)
MetaboLights (2)
EGA (1)

Tissue

Cell culture (4)
Permanent cell line cell (2)
B cell (1)
Brain (1)
Germinal epithelium of ovary (1)
Hepatocyte (1)
Melanocyte (1)
Ovarian serous adenocarcinoma cell line (1)

Disease

Amyotrophic lateral sclerosis (1)
Diffuse large B-cell lymphoma (1)
Ovarian carcinoma (1)
Uveal melanoma (1)

Technology Type

Mass Spectrometry (7)
Mass spectrometry (2)
Bottom-up proteomics (2)
Gel-based experiment (2)
Shotgun proteomics (2)
Affinity purification coupled with mass spectrometry proteomics (1)
Data-dependent acquisition (1)
Top-down proteomics (1)

Instrument Platform

Orbitrap Eclipse (2)
LTQ Orbitrap Elite (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)

Publication Date

2025 (6)
2026 (2)
2023 (2)
2014 (1)
2005 (1)
2024 (1)
2018 (1)
2021 (1)
2022 (1)
2019 (1)

CHEBI ID

CHEBI:15318 (2)
CHEBI:15729 (2)
CHEBI:15929 (2)
CHEBI:16015 (2)
CHEBI:16040 (2)
CHEBI:16196 (2)
CHEBI:16235 (2)
CHEBI:16450 (2)
CHEBI:16467 (2)
CHEBI:16543 (2)
CHEBI:16552 (2)
CHEBI:16643 (2)
CHEBI:16734 (2)
CHEBI:16924 (2)
CHEBI:16958 (2)
CHEBI:17053 (2)
CHEBI:17203 (2)
CHEBI:17368 (2)
CHEBI:17397 (2)
CHEBI:17509 (2)
CHEBI:17521 (2)
CHEBI:17533 (2)
CHEBI:17568 (2)
CHEBI:17750 (2)
CHEBI:17802 (2)
CHEBI:18019 (2)
CHEBI:18292 (2)
CHEBI:21557 (2)
CHEBI:2198 (2)
CHEBI:223316 (2)

Metabolite Name

Betaine (2)
Deoxyuridine (2)
Ecgonine (2)
Glycochenodeoxycholate (2)
Guanine (2)
Hypoxanthine (2)
Methyl palmitate (2)
Uracil (2)
(+)-2,7-Dideoxypancratistatin (1)
(+)-Plicamine (1)
(+/-)-6-Acetonyldihydrosanguinarine (1)
(+/-)-c75 (1)
(+/-)12(13)-DiHOME (1)
(-)-Jasmonic acid (1)
(-)-alpha-Bisabolol (1)
(-)-camphor (1)
(-)-caryophyllene oxide (1)
(1-Ribosylimidazole)-4-acetate (1)
(10S)-Juvenile hormone III acid diol (1)
(13S,14R)-1-Hydroxy-13-O-acetyl-N-methylcanadine (1)
(1R,5aS,6R)-4a-Hydroxy-1,4,4a,5,5a,6,9,10a-octahydrophenazine-1,6-dicarboxylate (1)
(2R)-O-Phospho-3-sulfolactate (1)
(2R,3R)-3-Methylglutamyl-5-semialdehyde-N6-lysine (1)
(2R,3R)-3-Methylornithine (1)
(3R)-beta-Leucine (1)
(4S)-4-Hydroxy-5-phosphooxypentane-2,3-dione (1)
(5S,6S)-6-Amino-5-hydroxycyclohexa-1,3-diene-1-carboxylate (1)
(6R)-10-Formyltetrahydropteroyldiglutamate (1)
(9Z)-Octadecenoic acid (1)
(9cis)-retinal (1)

Study type

Transcription profiling by SAGE (1)
RNA-seq of coding RNA (1)

Release Date

2023 (99)
2025 (91)
2024 (83)
2022 (78)
2021 (56)
2020 (48)
2019 (34)
2018 (23)
2026 (15)
2017 (13)
2016 (10)
2015 (9)
2014 (7)
2013 (5)
2005 (3)
2012 (2)
2010 (1)
2008 (1)

Lab affiliation

Department of Ophthalmology, Ninth People's Hospital, Shanghai JiaoTong University School of Medicine, Shanghai, China. (1)
Departments of Neurology and Neuroscience Mayo Clinic, Rochester, MN, USA (1)
Lymphoid Malignancies Branch Center for Cancer Research National Cancer Institute National Institutes of Health Bethesda, Maryland (1)
Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences (1)
School of pharmaceutical science,Sun Yat-Sen University (1)
Shantou University Medical College (1)
shanghaitech university (1)

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Significant insights from a National survey in China: PrEP awareness, willingness, uptake, and adherence among YMSM students.

Not available

S-EPMC11010336 | biostudies-literature

Infection by and genotype characteristics of Enterocytozoon bieneusi in HIV/AIDS patients from Guangxi Zhuang autonomous region, China.

Not available

S-EPMC5640944 | biostudies-literature

Fusarium and allied fusarioid taxa (FUSA). 1.

Not available

S-EPMC9355104 | biostudies-literature

In-cell proteomics enables high-resolution temporal profiling of cell cycle progression and DNA damage response in Saccharomyces cerevisiae

Yeast is a widely used model organism in biological and proteomics research. Conventional bottom-up proteomic analysis of yeast cells requires disruption of the rigid cell wall to extract proteins, which is often associated with lengthy procedures, significant technical variations and noticeable sam...

ORGANISM(S): Saccharomyces Cerevisiae (ncbitaxon:4932)

2025-05-26 | MSV000097997 | MassIVE

Arginine-induced metabolomic perturbation in Streptococcus mutans

BACKGROUND: Streptococcus mutans is a major pathogen responsible for dental caries. Arginine is a promising potential caries preventive agent which can inhibit the growth of S. mutans. However, the mechanism whereby arginine inhibits S. mutans growth r...

2023-10-20 | MTBLS3020 | MetaboLights

Benchmarking In-Cell Proteomics For Profiling Neuroblastoma Cell Differentiation And The Ubiquitin-Proteasome System

The human neuroblastoma SH-SY5Y cell line is a widely utilized model for studying neurodegenerative diseases, owing to its ability to differentiate into cells with a neuron-like phenotype. However, a comprehensive understanding of the cellular and molecular mechanisms underpinning the SH-SY5Y cell d...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2025-05-02 | MSV000097787 | MassIVE

Pain spectrum in immune checkpoint inhibitor-related adverse events: evolution, characteristics and management challenges based on bibliometrics.

Not available

S-EPMC12935806 | biostudies-literature

Dysbiosis of gut microbiota inhibits NMNAT2 to promote neurobehavioral deficits and oxidative stress response in the 6-OHDA-lesioned rat model of Parkinson's disease.

Not available

S-EPMC10199500 | biostudies-literature

A new species of Nemoura (Plecoptera, Nemouridae) and supplementary description of Amphinemura cordiformis from the Nanling Mountains of southern China.

Not available

S-EPMC8159917 | biostudies-literature

α-Actinin1 promotes tumorigenesis and epithelial-mesenchymal transition of gastric cancer via the AKT/GSK3β/β-Catenin pathway.