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ProteomicsDiadenosine tetraphosphate as a cosubstrate for AMPylation mediated by FICD
Diadenosine polyphosphates (ApnAs) are noncanonical nucleotides that are ubiquitous across all forms of life. Due to their strong accumulation upon cellular stress, they are considered alarmones to signal homeostatic imbalance. Nonetheless, their cellular role is poorly understood. In this work, we ...
ORGANISM(S): Homo sapiens (Human) 
2023-01-27 | PXD036450 | Pride
Diadenosine tetraphosphate Ampylation Ficd Post-translational modification Proteomics 
TranscriptomicsTranscription profiling of Rhizobium leguminosarum biovar viciae strain 3841 grown on acetate versus glucose
Rhizobium leguminosarum biovar viciae strain 3841 was grown on glucose ammonia AMS versus acetate ammonia AMS and gene expression compared
ORGANISM(S): Rhizobium leguminosarum 
2009-06-11 | E-MEXP-1963 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Rhizobium leguminosarum biovar viciae strain 3841 inoculated onto pea seeds compared to cells grown in free-living culture on succinate ammonia AMS
Rhizobium leguminosarum bv viciae strain 3841 was inoculated onto pea (Pisum sativum) seeds and nodules were harvested at 28 d. The gene expression was compared to free-living bacteria grown on succinate ammonia AMS medium.
ORGANISM(S): Rhizobium leguminosarum 
2008-11-30 | E-MEXP-1925 | biostudies-arrayexpress
TranscriptomicsTranscription profiling time series of Rhizobium leguminosarum from pea nodules compared to cells grown in free-living culture on succinate ammonia AMS
Time course of bacteroid formation. Bacteroids were harvested from pea nodules at 7, 15 and 21 d after inoculation onto 7 d old pea plants. The transcription profile of each bacteroid sample at the 3 time points was compared to cells grown in free-living culture on succinate ammonia AMS.
ORGANISM(S): Rhizobium leguminosarum 
2008-11-27 | E-MEXP-1918 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of free-living cultures of Rhizobium leguminosarum strain 3841 grown on pyruvate ammonia AMS verses the same strain grown on glucose ammonia AMS
Free-living cultures of Rhizobium leguminosarum strain 3841 grown on pyruvate ammonia AMS vesus the same strain grown on glucose ammonia AMS.
ORGANISM(S): Rhizobium leguminosarum 
2008-12-19 | E-MEXP-1959 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Rhizobium leguminosarum biovar viciae strain 3841grown in AMS minimal salts on either glucose ammonia or myo-inositol ammonia
Rhizobium leguminosarum biovar viciae strain 3841 was grown in AMS minimal salts on either glucose ammonia or myo-inositol ammonia and gene expression compared.
ORGANISM(S): Rhizobium leguminosarum 
2008-12-18 | E-MEXP-1961 | biostudies-arrayexpress
ProteomicsChemoproteomic discovery of a human RNA ligase
RNA ligases are present across all forms of life. While enzymatic RNA ligation between 5'-PO4 and 3'-OH termini is prevalent in viruses, fungi, and plants, such RNA ligases are yet to be identified in vertebrates. Here, using a nucleotide-based chemical probe targeting human AMPylated proteome, we h...
ORGANISM(S): Homo sapiens (Human) 
2023-01-27 | PXD038132 | Pride
Rna ligation Ampylation Proteomics Post-translational modification 
TranscriptomicsTranscription profiling of free-living Rhizobium leguminosarum bacteria grown on succinae ammonia AMS compared to glucose ammonia AMS
Free-living bacteria were grown on succinae ammonia AMS and gene expression was compared to free-living bacteria grown on glucose ammonia AMS.
ORGANISM(S): Rhizobium leguminosarum 
2008-11-30 | E-MEXP-1919 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Rhizobium leguminosarum biovar viciae strain 3841grown on AMS minimal medium with either succinate ammonia or glucose ammonia as carbon and nitrogen sources
Rhizobium leguminosarum bivar viciae strain 3841 was grown on AMS minimal medium with either succinate ammonia or glucose ammonia as carbon and nitrogen sources. Gene expression was compared between the two crabon sources. Total RNA was amplified using Genispheres SenseAmp kit.
ORGANISM(S): Rhizobium leguminosarum 
2008-12-18 | E-MEXP-1962 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Rhizobium leguminosarum biovar viciae strain 3841 inoculated onto vetch seeds compared to cells grown in free-living culture on succinate ammonia AMS
Rhizobium leguminosarum biovar viciae strain 3841 was inoculated onto Viccia cracca seeds and bacteroids were harvested at 28d. Gene expression was then compared to free-living Rhizobium leguminosarum biovar viciae strain 3841 grown on succinate ammonia AMS.
ORGANISM(S): Rhizobium leguminosarum 
2008-11-30 | E-MEXP-1924 | biostudies-arrayexpress
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