Yue L L - OmicsDI

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Unknown (3821)
Proteomics (211)
Transcriptomics (174)
Genomics (77)
Metabolomics (43)
Models (3)
Genomic (1)

Organisms

Homo sapiens (258)
Mus musculus (109)
Saccharomyces cerevisiae (5)
Caenorhabditis elegans (4)
Ovis aries (4)
Drosophila melanogaster (4)
Sus scrofa (3)
Nicotiana benthamiana (3)
Arabidopsis thaliana (3)
Oryza sativa (3)
Rattus (2)
synthetic construct (2)
Zea mays (2)
Larimichthys crocea (2)
Bos taurus (2)
Arthrostemma ciliatum (1)
Candida tropicalis MYA-3404 (1)
uncultured soil microorganism (1)
Camellia sinensis (1)
Brassica oleracea (1)
Leptospira interrogans serovar Lai str. 56601 (1)
Marmota monax (1)
uncultured bacterium (1)
Bemisia tabaci (1)
Panonychus citri (1)
Macaca fascicularis (1)
Schizosaccharomyces pombe (1)
Streptococcus pneumoniae (1)
Setaria italica (1)
Glycine max (1)

Repository

biostudies-arrayexpress (200)
iProX (97)
pride (88)
EGA (51)
MetaboLights (40)
MassIVE (20)
BioModels (3)
GNPS (3)
jPOST (3)
PAXDB (2)
dbGaP (1)
PanoramaPublic (1)

Tissue

Cell culture (30)
Permanent cell line cell (5)
Embryonic stem cell (4)
Stem cell (4)
Blood plasma (3)
Blood serum (3)
Brain (3)
Bone marrow (2)
Epithelial cell (2)
HeLa cell (2)
Leaf (2)
Liver (2)
Root (2)
Shoot (2)
Testis (2)
Whole body (2)
Alveolar system (1)
Blood vessel smooth muscle cell (1)
Brown adipose tissue (1)
Cerebrospinal fluid (1)
Colon (1)
Cotyledon (1)
Diploid cell (1)
Endosperm (1)
HEK-293T cell (1)
Hepatocyte (1)
Keratinocyte (1)
Lung (1)
Macrophage (1)
Mammary gland (1)

Disease

Acute myeloid leukemia (10)
Cervix carcinoma (2)
Disease free (2)
Normal (1)
Adult respiratory distress syndrome (1)
Alcohol (1)
Cardiovascular system disease (1)
Hepatocellular carcinoma (1)
Long COVID (1)
Renal cell carcinoma (1)
Skin melanoma (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (88)
Shotgun proteomics (45)
Mass spectrometry (32)
Mass spectrometry assay (8)
Bottom-up proteomics (8)
Data-independent acquisition (8)
Gel-based experiment (8)
Affinity purification coupled with mass spectrometry proteomics (7)
Top-down proteomics (6)
Data-dependent acquisition (5)
SWATH MS (4)
HDMSE (2)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Olink affinity proteomics (1)
Proteogenomics (1)
SRM/MRM (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (19)
Liquid Chromatography MS - positive - reverse phase (18)
Illumina HiSeq 2500 (7)
Q Exactive (7)
Q Exactive HF-X (4)
Q Exactive HF (3)
6540 Q-TOF LC/MS (Agilent) (3)
Liquid Chromatography MS - negative - reverse-phase (3)
Liquid Chromatography MS - positive - reverse-phase (3)
Illumina NovaSeq 6000 (2)
LTQ (2)
LTQ Orbitrap Velos (2)
Orbitrap Exploris 480 (2)
Liquid Chromatography MS - - reverse phase (2)
Liquid Chromatography MS - positive - hilic (2)
Illumina Genome Analyzer II (1)
Illumina NovaSeq X (1)
HiSeq X Ten (1)
Illumina HiSeq 1500 (1)
Illumina HiSeq 2000 (1)
Exactive (1)
LTQ Orbitrap Elite (1)
Orbitrap Astral (1)
Orbitrap Eclipse (1)
Orbitrap Fusion ETD (1)
Orbitrap Fusion Lumos (1)
Q Exactive Plus (1)
5975C Series GC/MSD (Agilent) (1)
Agilent GC/MS, LECO GC/TOFMS (1)
Gas Chromatography MS - positive (1)

Publication Date

2021 (46)
2025 (36)
2013 (36)
2024 (35)
2023 (35)
2015 (34)
2014 (33)
2022 (33)
2012 (28)
2026 (26)
2016 (24)
2010 (21)
2020 (20)
2011 (16)
2019 (10)
2017 (9)
2018 (5)
2005 (3)
2009 (2)
2008 (2)
2007 (1)

UNIPROT ID/AC

1FEH1_WHEAT (2)
4565.Traes_1AL_3CF82DD08.2 (2)
4565.Traes_1AL_3FDB6FDB4.1 (2)
4565.Traes_1AL_44FB362A9.2 (2)
4565.Traes_1AL_4E621A250.2 (2)
4565.Traes_1AL_51D597B92.1 (2)
4565.Traes_1AL_52E56C8D3.1 (2)
4565.Traes_1AL_53F3380AF.1 (2)
4565.Traes_1AL_5E2C30B46.1 (2)
4565.Traes_1AL_6B64D0E80.1 (2)
4565.Traes_1AL_72202D9DF.1 (2)
4565.Traes_1AL_738358449.1 (2)
4565.Traes_1AL_78CB13657.2 (2)
4565.Traes_1AL_7B509569F.1 (2)
4565.Traes_1AL_7CF571E9F.1 (2)
4565.Traes_1AL_7D6DC73FC.2 (2)
4565.Traes_1AL_9C2D7A0A6.1 (2)
4565.Traes_1AL_9EFC68149.1 (2)
4565.Traes_1AL_A47D32D30.1 (2)
4565.Traes_1AL_A69755144.1 (2)
4565.Traes_1AL_B15921488.1 (2)
4565.Traes_1AL_BAAF4391C.1 (2)
4565.Traes_1AL_BAB3D977B.1 (2)
4565.Traes_1AL_D06A380E9.2 (2)
4565.Traes_1AL_D39C4F23A.2 (2)
4565.Traes_1AL_D789B5634.1 (2)
4565.Traes_1AL_D8B97BD8D.1 (2)
4565.Traes_1AL_D8FE82B94.1 (2)
4565.Traes_1AL_E07235CF1.1 (2)
4565.Traes_1AL_EEB8BBB6B.1 (2)

CHEBI ID

CHEBI:16750 (11)
CHEBI:16335 (10)
CHEBI:16708 (9)
CHEBI:16919 (9)
CHEBI:17154 (9)
CHEBI:17568 (9)
CHEBI:17596 (9)
CHEBI:18257 (9)
CHEBI:30769 (9)
CHEBI:7916 (9)
CHEBI:15756 (8)
CHEBI:15891 (8)
CHEBI:16040 (8)
CHEBI:16704 (8)
CHEBI:16755 (8)
CHEBI:16865 (8)
CHEBI:17368 (8)
CHEBI:17509 (8)
CHEBI:17562 (8)
CHEBI:17964 (8)
CHEBI:18211 (8)
CHEBI:28834 (8)
CHEBI:15354 (7)
CHEBI:15682 (7)
CHEBI:16196 (7)
CHEBI:16235 (7)
CHEBI:16393 (7)
CHEBI:16450 (7)
CHEBI:16525 (7)
CHEBI:29108 (1)

Metabolite Name

Taurine (9)
Uracil (9)
Guanosine (8)
Ornithine (8)
Adenine (7)
Adenosine (7)
Creatine (7)
Cytosine (7)
Hypoxanthine (7)
Inosine (7)
Palmitic acid (7)
Riboflavin (7)
Thymine (7)
Deoxycholic acid (6)
Dodecanoic acid (6)
Guanine (6)
Spermidine (6)
Trehalose (6)
Uridine (6)
4-Pyridoxic acid (5)
Asparagine (5)
Choline (5)
Citrulline (5)
Creatinine (5)
Glycerophosphocholine (5)
Glycocholic acid (5)
Indole (5)
Kynurenic acid (5)
L-Histidine (5)
L-Isoleucine (5)

IsPrivate

False (3)

Modelling Approach

Ordinary differential equation model (2)
Constraint-based model (1)

Study type

Transcription profiling by array (79)
RNA-seq of coding RNA (40)
ChIP-seq (14)
Comparative genomic hybridization by array (12)
Other (12)
Methylation profiling by high throughput sequencing (12)
MicroRNA profiling by array (8)
Unknown experiment type (5)
RNA-seq of non coding RNA (5)
Methylation profiling by array (4)
Transcription profiling by SAGE (2)
Animal - High-throughput sequencing (2)
Transcription profiling by tiling array (2)
ChIP-chip by tiling array (1)
Genotyping by array (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2025 (555)
2022 (534)
2024 (491)
2023 (487)
2021 (386)
2020 (323)
2019 (209)
2018 (156)
2015 (137)
2016 (135)
2017 (133)
2014 (111)
2026 (94)
2013 (89)
2012 (58)
2011 (40)
2010 (36)
2009 (18)
2008 (9)
2005 (6)
2007 (4)
2006 (4)
2004 (3)
2002 (1)
2001 (1)
1976 (1)

Lab affiliation

Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (16)
Hong Kong University of Science and Technology (2)
Nankai University (2)
Shanghai Institute of Materia Medica, Chinese Academy of Sciences (2)
State Key Laboratory of Medical Molecular Biology, Department of Biochemistry and Molecular Biology, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences, School of Basic Medicine Peking Union Medical College, Beijing 100005, China (2)
State Key Laboratory of Medical Molecular Biology, Department of Biochemistry and Molecular Biology, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences, School of Basic Medicine Peking Union Medical College, Beijing 100005, China. (2)
State Key Laboratory of Reproductive Medicine and Offspring Health， Nanjing Medical University, Nanjing, China. (2)
University of Minnesota (2)
University of Minnesota at Twin Cities (2)
1. Nephrology Department of Guilin No. 924 Hospital, Guangxi Key laboratory of Metabolic Diseases Research, Guilin Key laboratory of Kidney Diseases Research, 541002, Guilin, Guangxi, People’s Republic of China. 2. Clinical Medical Research Center, the Second Clinical Medical College of Jinan University (Shenzhen People’s Hospital), 518020, Shenzhen, Guangdong, People’s Republic of China. (1)
Beijing Advanced Innovation Center for Soft Matter Science and Engineering, Beijing University of Chemical Technology (1)
Beijing Institute of Genomics, Chinese Academy of Sciences, China National Center for Bioinformation (1)
Ben May Department for Cancer Research, the University of Chicago, Chicago, IL 60637, USA. (1)
Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (1)
Center for Alzheimer's and Related Dementias (CARD), NIA and NINDS, NIH, Bethesda, Maryland, USA. (1)
Center for Alzheimer's and Related Dementias (CARD), National Institute on Aging and National Institute of Neurological Disorders and Stroke, National Institutes of Health, Bethesda, MD, USA. (1)
Center for Alzheimer’s and Related Dementias, National Institutes of Health, Bethesda, MD, USA (1)
Center for Translational Biomedical Research, The University of North Carolina at Greensboro. (1)
Cheeloo Medical College, Shandong University, Jinan, Shandong, China (1)
China,Hunan Agricultural University,College of Agriculture (1)
College of Life Science, Capital Normal University, 100048 Beijing, China (1)
College of Life Science, Capital Normal University, Beijing 100048, China (1)
College of Life Sciences, Wuhan University (1)
College of Pharmceutial Science, Zhejiang University of Technology (1)
Department of Animal Sciences, Purdue University, West Lafayette, IN 47907, USA Center for Cancer Research Purdue University, West Lafayette, IN 47907, USA (1)
Department of Biochemistry and Molecular Biology Department of Urology, Mayo clinic, Rochester MN, US (1)
Department of Biochemistry and Molecular Biology, College of Basic Medicine, Key Laboratory of Medical Biotechnology of Hebei Province, Hebei Medical University, Shijiazhuang, China (1)
Department of Biochemistry and Molecular Genetics, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA. (1)
Department of Chemistry, Michigan State University, East Lansing, Michigan 48824, United States (1)
Department of Hernia and Abdominal Wall Surgery, General Surgery, Qilu Hospital, Cheeloo College of Medicine, Shandong University, Jinan, PR China. (1)

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Mitochondrial L-2-hydroxyglutarate is a physiologic signaling metabolite

L-2-hydroxyglutarate (L-2-HG) is a low-abundance metabolite in mammals, due to the mitochondrial enzyme L-2-HG dehydrogenase (L2HGDH), which oxidizes L-2-HG to 2-oxoglutarate (2-OG) to prevent its accumulation. In humans lacking L2HGDH activity, L-2-HG builds up, leading to L-2-HG aciduria, a rare c...

ORGANISM(S): Mus musculus (Mouse)

2026-03-31 | PXD054020 | Pride

GNPS_WP of ficus carica L 20240103

Figs (Ficus carica L.) represents one of the main species of this genus, whose sweet and succulent fruits are widely cultivated and consumed worldwide.

ORGANISM(S): Ficus <angiosperm> (ncbitaxon:3493)

2024-01-03 | MSV000093755 | GNPS

GNPS_WE of ficus carica L 20240103

Figs (Ficus carica L.) represents one of the main species of this genus, whose sweet and succulent fruits are widely cultivated and consumed worldwide

ORGANISM(S): Ficus <angiosperm> (ncbitaxon:3493)

2024-01-03 | MSV000093753 | GNPS

Proteomic Analysis Reveals Key Proteins Involved in Ethylene-Induced Adventitious Root Development in Cucumber (Cucumis sativus L.)

Ethylene, as a signaling hormone molecule, is proved to have essential role in the process of root development. In the present study, cucumber (Cucumis sativus L.) seedlings were employed to estimate differentially expressed proteins (DEPs) during the adventitious rooting using iTRAQ technique and p...

ORGANISM(S): Cucumis sativus Brassica napus (Rape)

2020-01-15 | PXD016444 | Pride

Ethylene adventitious root proteomics ethylene synthesis photosynthetic carbon assimilation

Genome sequencing of the important oilseed crop Sesamum indicum L.

Not available

S-EPMC3663098 | biostudies-literature

Poly[[μ(7)-l-cysteato(2-)]disodium].

Not available

S-EPMC3201222 | biostudies-literature

The Protective Effects of L-Theanine against Epigallocatechin Gallate-Induced Acute Liver Injury in Mice.

Not available

S-EPMC11011850 | biostudies-literature