Zeng L L - OmicsDI

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Unknown (13667)
Proteomics (243)
Transcriptomics (190)
Metabolomics (60)
Genomics (42)
Models (2)
Other (1)
Multiomics (1)

Organisms

Homo sapiens (154)
Mus musculus (72)
Oryza sativa (7)
Arabidopsis thaliana (4)
Rattus norvegicus (4)
Streptococcus suis 05ZYH33 (3)
Pan troglodytes (3)
Equus caballus (3)
synthetic construct (3)
Drosophila melanogaster (3)
Danio rerio (3)
Zea mays (3)
Manihot esculenta (2)
Vitis vinifera (2)
Ovis aries (2)
Sus scrofa (2)
Pseudoalteromonas sp. SM9913 (1)
Papilio zelicaon (1)
Saccharum (1)
Culex pipiens (1)
Jatropha curcas (1)
Boehmeria nivea (1)
Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 (1)
Hevea brasiliensis (1)
Colletotrichum higginsianum (1)
Syntrichia ruralis (1)
Eucalyptus camaldulensis x Eucalyptus grandis (1)
Capra hircus (1)
Brucella melitensis bv. 1 str. 16M (1)
Cupriavidus necator (1)

Repository

biostudies-arrayexpress (208)
pride (148)
iProX (81)
MetaboLights (58)
EGA (23)
MassIVE (9)
jPOST (3)
GNPS (2)
BioModels (1)
Cell Collective (1)
PanoramaPublic (1)
PAXDB (1)
PeptideAtlas (1)
ENA (1)

Tissue

Cell culture (37)
Epithelial cell (11)
Leaf (8)
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Root (6)
Permanent cell line cell (6)
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Blood plasma (5)
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Blood (5)
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Lung (4)
Embryonic stem cell (3)
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Whole membrane (2)
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Urine (2)
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Rosette (2)
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T cell (2)
Others (1)

Disease

Colon cancer (7)
Disease free (4)
Non-small cell lung carcinoma (3)
Type 2 diabetes mellitus (3)
Breast cancer (3)
Liver carcinoma (2)
DNA damage (1)
Lung adenocarcinoma (1)
Secondary progressive multiple sclerosis (1)
Prostatic hypertrophy (1)
Melanomatosis (1)
Obesity (1)
Congenital disorder of glycosylation Iq (1)
Bone osteosarcoma (1)
Lung squamous cell carcinoma (1)
Retinal disease (1)
Esophagus squamous cell carcinoma (1)
Acute pancreatitis (1)
Multiple sclerosis (1)
Inflammation (1)
Pancreatitis (1)
Stomach cancer (1)
Neck carcinoma (1)
Lung carcinoma (1)
Skin cancer (1)
Systemic lupus erythematosus (1)
Lymphoma (1)
Inflammatory bowel disease (1)
Chronic myeloid leukemia (1)
Brain cancer (1)

Technology Type

Mass Spectrometry (148)
Shotgun proteomics (66)
Mass spectrometry (48)
Bottom-up proteomics (31)
Data-dependent acquisition (18)
Mass spectrometry assay (10)
Affinity purification coupled with mass spectrometry proteomics (10)
Chemical cross-linking coupled with mass spectrometry proteomics (9)
Gel-based experiment (8)
Top-down proteomics (8)
Mass spectrometry imaging (4)
SWATH MS (4)
Data-independent acquisition (4)
Illumina Genome Analyzer II (3)
DiaPASEF (2)
Illumina HiSeq 2500, Illumina MiSeq (1)
Illumina Genome Analyzer, Illumina HiSeq 2000, Illumina MiSeq, Affymetrix_U133plus2- (1)
ABI_SOLID, Illumina Genome Analyzer IIx, Affymetrix_GenomeWide_SNP6.34 (1)
Affymetrix 6.0, Illumina Genome Analyzer II (1)
Olink affinity proteomics (1)
Proteogenomics (1)
Affinity proteomics (1)
MSE (1)
All-ion fragmentation (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (24)
Liquid Chromatography MS - negative - reverse phase (17)
Liquid Chromatography MS - positive - reverse-phase (6)
Liquid Chromatography MS - negative - hilic (6)
Illumina NovaSeq 6000 (5)
Liquid Chromatography MS - negative - reverse-phase (5)
Q Exactive (4)
Liquid Chromatography MS - negative (4)
Liquid Chromatography MS - alternating - reverse-phase (4)
Liquid Chromatography MS - positive - hilic (4)
HiSeq X Ten (2)
Illumina HiSeq 2500 (2)
Illumina HiSeq 2000 (2)
LTQ FT (2)
LTQ Orbitrap Velos (2)
Q Exactive Plus (2)
10x Genomics Chromium Controller, PCR thermocycler, Agilent 2100 Bioanalyzer with High Sensitivity DNA chip (for quality control) (1)
Water bath (for enzymatic dissociation), cell strainer (70-μm), benchtop centrifuge, automated cell counter/hemocytometer, biological safety cabinet (1)
Sterile surgical instrument set (scalpels, tissue forceps, dissection scissors), animal operating table, biological safety cabinet (1)
Illumina Genome Analyser II (1)
Illumina NovaSeq X (1)
Illumina HiSeq 4000 (1)
NextSeq 500 (1)
MaXis (1)
Synapt G2 MS (1)
TimsTOF (1)
TimsTOF SCP (1)
Q Exactive HF (1)
Orbitrap Exploris 480 (1)
Q Exactive HF-X (1)

Publication Date

2025 (50)
2023 (44)
2021 (37)
2012 (35)
2022 (32)
2026 (31)
2024 (30)
2015 (26)
2010 (24)
2013 (23)
2011 (22)
2019 (21)
2014 (21)
2016 (19)
2020 (14)
2018 (12)
2008 (12)
2017 (8)
2009 (8)
2007 (7)
2005 (3)

UNIPROT ID/AC

A0A067FZ61_CITSI (1)
A0A067GQV1_CITSI (1)
2711.XP_006479514.1 (1)
A0A067DFZ9_CITSI (1)
A0A067FMS6_CITSI (1)
A0A067FN46_CITSI (1)
2711.XP_006488147.1 (1)
A0A067E153_CITSI (1)
A0A067GBL5_CITSI (1)
A0A067DAW0_CITSI (1)
A0A067F736_CITSI (1)
A0A067E4G7_CITSI (1)
A0A067F5B1_CITSI (1)
A0A067H4G6_CITSI (1)
A0A067GSQ9_CITSI (1)
A0A067F3J5_CITSI (1)
A0A067DL13_CITSI (1)
A0A067HBD9_CITSI (1)
A0A067FFQ8_CITSI (1)
A0A067FJK5_CITSI (1)
A0A067GDN4_CITSI (1)
A0A067GB16_CITSI (1)
A0A067E0C7_CITSI (1)
A0A067F7N5_CITSI (1)
A0A067F898_CITSI (1)
A0A067EZA9_CITSI (1)
2711.XP_006478245.1 (1)
A0A067DT91_CITSI (1)
A0A067E5T0_CITSI (1)
2711.XP_006487074.1 (1)

ENSEMBL ID

ENSG00000170477 (1)

CHEBI ID

CHEBI:30769 (16)
CHEBI:16704 (14)
CHEBI:16335 (13)
CHEBI:15741 (11)
CHEBI:17895 (11)
CHEBI:17596 (11)
CHEBI:15756 (11)
CHEBI:17351 (11)
CHEBI:16750 (10)
CHEBI:28842 (10)
CHEBI:16196 (10)
CHEBI:16359 (10)
CHEBI:18012 (10)
CHEBI:30915 (10)
CHEBI:17368 (10)
CHEBI:7916 (9)
CHEBI:16027 (9)
CHEBI:27897 (9)
CHEBI:16828 (9)
CHEBI:64563 (9)
CHEBI:25094 (8)
CHEBI:18257 (8)
CHEBI:16708 (8)
CHEBI:6650 (8)
CHEBI:28044 (8)
CHEBI:30746 (8)
CHEBI:16235 (8)
CHEBI:17750 (8)
CHEBI:15891 (8)
CHEBI:55328 (8)

Metabolite Name

Cholic acid (13)
Docosahexaenoic acid (12)
Azelaic acid (12)
Uridine (12)
Deoxycholic acid (11)
Palmitic acid (11)
Dodecanedioic acid (11)
Hypoxanthine (11)
Indole (10)
Taurine (10)
Glycocholic acid (10)
Citric acid (10)
Adenosine (10)
Tetradecanedioic acid (10)
Xanthine (10)
Inosine (10)
Uracil (9)
Taurocholic acid (9)
Arachidonic acid (9)
Stearic acid (9)
Adenine (9)
Myristic acid (9)
Uric acid (9)
Guanosine (9)
Thymidine (9)
L-Tyrosine (9)
Phenol (8)
Pentadecanoic acid (8)
4-Hydroxybenzaldehyde (8)
Oleamide (8)

IsPrivate

False (1)

First Public Date

2024 (1)

Modelling Approach

Ordinary differential equation model (1)

Modification

57.021464 (1)
Not available (1)

Study type

Transcription profiling by array (136)
RNA-seq of coding RNA (29)
ChIP-seq (13)
Methylation profiling by high throughput sequencing (5)
RNA-seq of coding RNA from single cells (4)
RNA-seq of non coding RNA (4)
Comparative genomic hybridization by array (3)
Methylation profiling by array (3)
Animal - High-throughput sequencing (2)
Transcription profiling by SAGE (1)
Unknown experiment type (1)
Differential (1)
ChIP-chip by tiling array (1)
RNAi profiling by array (1)
ChIP-chip by array (1)
Genotyping by array (1)
Transcription profiling by RT-PCR (1)
RNA-seq of total RNA (1)

Release Date

2025 (2156)
2022 (1974)
2023 (1728)
2024 (1671)
2021 (1481)
2020 (1081)
2019 (719)
2018 (622)
2017 (498)
2016 (430)
2015 (326)
2026 (323)
2014 (250)
2013 (162)
2012 (137)
2011 (97)
2010 (70)
2009 (58)
2008 (37)
2007 (18)
2006 (16)
2005 (8)
2004 (7)
2000 (2)
2003 (1)
2002 (1)
2001 (1)
1999 (1)

Lab affiliation

The Sixth Affiliated Hospital, Sun Yat-sen University, Guangzhou, Guangdong, China (6)
School of Life Sciences, Southern University of Science and Technology, Shenzhen 518055, Guangdong, China (3)
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (3)
Wageningen University (3)
College of Agronomy, Jiangxi Agricultural University (2)
1Department of Hematology, Tongji Hospital, Frontier Science Center for Stem Cell Research, Shanghai Key Laboratory of Signaling and Disease Research, School of Life Sciences and Technology, Tongji University, Shanghai, 200092, China (2)
Mayo Clinic, Department of Oncology (2)
Hong Kong University of Science and Technology (2)
Department of Hepatobiliary Surgery, Nanfang Hospital, Southern Medical University, Guangzhou, China (2)
State Key Laboratory of Reproductive Medicine, Nanjing Medical University (2)
State Key Laboratory of Oncology in South China (2)
Shandong Agricultural University (2)
University of FLorida (1)
1. Fisheries College, Key Laboratory of Healthy Mariculture for the East China Sea, Ministry of Agriculture, Jimei University, Xiamen, Fujian, 361021, PR China (1)
Department of Burns and Reconstructive Surgery, Xiangya Hospital, Central South University, Changsha, Hunan, P.R. China. (1)
Target discovery Institute (1)
Department of Rehabilitation Medicine, The Second Affiliated Hospital, School of Medicine, South China University of Technology, Guangzhou 510180, China (1)
Frontiers Science Center for Immunology and Metabolism, Medical Research Institute, Whuhan University Donghu Road, No. 115, Wuchang District, Wuhan, Hubei Province, P.R. China. 430071 (1)
Brown University MCB Department (1)
Target discovery Institute, University of Oxford (1)
Molecular Biology and Biotechnology, University of Sheffield, UK (1)
Capital institute of Pediatrics. (1)
1. School of Biomedical Sciences, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Hong Kong Special Administrative Region, China. 2. Centre for Translational Stem Cell Biology, The University of Hong Kong, Hong Kong Special Administrative Region, China. (1)
Department of Neurology, Emory School of Medicine (1)
El Bachir Affar, PhD, Professor Department of Medicine, University of Montreal Director of the Cell Signaling and Cancer Research Unit Research Center, Maisonneuve-Rosemont Hospital 5415 Assomption Blvd., Montreal, Quebec, H1T 2M4, CANADA Tel: 514 252-3400 (Ext: 3343) (1)
Jun Jim Zhangjunjimzhang@sjtu.edu.cnMinistry of Education-Shanghai Key Laboratory of Children's Environmental Health, Xinhua Hospital, Shanghai Jiao Tong University School of Medicine (1)
Department of Cancer and Inflammation Research, Institute of Molecular Medicine, University of Southern Denmark, 5000 Odense, Denmark (1)
School of Medicine, School of Life Sciences, Westlake University, Hangzhou, Zhejiang, China. (1)
second xiangya hospital central south university (1)
Molecular Structure of Cell Signalling Laboratory, The Francis Crick Institute, 1 Midland Road, London, NW1 1AT, UK (1)

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Proteomic analysis of eut induced L. monocytogenes cells compared to eut non-induced L. monocytogenes cells to explore virulence potential and stress responses.

This study was conducted for the comparative proteomic analysis of eut induced L. monocytogenes cells compared to eut non-induced L. monocytogenes cells to explore virulence potential and stress responses.

ORGANISM(S): Listeria monocytogenes EGD-e

2023-10-03 | PXD027979 | Pride

iTRAQ-based quantitative proteomic analysis reveals new metabolic pathways responding to cold stress in two Winter Turnip Rape (Brassica rapa L.), part 1

Winter turnip rape (Brassica rapa L.) is a valuable ecologically beneficial oil crop that is produced mainly for its ability of conserving soil and water in winter and spring and its high quality edible oil in northwestern China. However, coldness and extremely low temperature negatively affects the...

ORGANISM(S): Brassica rapa subsp. rapa

2019-11-12 | PXD008194 | Pride

Cold stress Winter turnip rape Proteomics Itraq

iTRAQ-based quantitative proteomic analysis reveals new metabolic pathways responding to cold stress in two Winter Turnip Rape (Brassica rapa L.), part 2

ORGANISM(S): Brassica rapa subsp. rapa

2019-11-12 | PXD008195 | Pride

Cold stress Winter turnip rape Proteomics Itraq

Hyperhomocysteinemia-related serum metabolome alterations not normalized by short-term folic acid treatment

Introduction

Hyperhomocysteinemia (HHCys) is an independent risk factor for various diseases such as cardiovascular diseases, Alzheimer's, and cancers. Folate deficiency is one of the significant reasons for HHCys. However, it is not known whether folate deficiency with HHCys is associated w...

2022-02-07 | MTBLS2150 | MetaboLights

Global landscape of protein phosphorylation during plant regeneration initiation in cotton (Gossypium hirsutum L.)

Phosphorylation is one of the most common post-translational modifications and is central to many cellular signaling events; however, little is currently known about the phosphorylation landscape during somatic embryogenesis (SE) for plant regeneration. Here, we systematically analyzed the phosphopr...

ORGANISM(S): Gossypium hirsutum

2025-03-18 | PXD061812 | Pride

Cotton (gossypium hirsutum l.) phosphoproteomics embryogenic differentiation plant regeneration initiation

Hepatic DsbA-L protects mice from diet-induced hepatosteatosis and insulin resistance.

Not available

S-EPMC5434661 | biostudies-literature

Draft Genome Sequence of Aldehyde-Degrading Strain Halomonas axialensis ACH-L-8.

Not available

S-EPMC4832173 | biostudies-literature

New and noteworthy boletes from subtropical and tropical China.

Not available

S-EPMC6401544 | biostudies-literature