Zhang Chan C - OmicsDI

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Unknown (1884)
Proteomics (79)
Genomics (59)
Transcriptomics (40)
Metabolomics (13)
Multiomics (1)

Organisms

Homo sapiens (130)
Mus musculus (23)
Escherichia coli (3)
Oryza sativa (2)
Triticum aestivum (2)
Momordica cochinchinensis (2)
Brucella abortus str. 2308 A (1)
Oryza sativa Japonica Group (1)
Rattus norvegicus (1)
Arabidopsis thaliana (1)
Eriocheir sinensis (1)
Hordeum vulgare (1)
Saccharomyces cerevisiae (1)
Secale cereale (1)

Repository

pride (60)
EGA (54)
biostudies-arrayexpress (45)
MassIVE (13)
MetaboLights (13)
iProX (5)
jPOST (1)

Tissue

Cell culture (15)
Epithelial cell (6)
B cell (3)
Blood serum (2)
Cell suspension culture (2)
Cerebrospinal fluid (2)
Mammary gland (2)
Ovary (2)
Permanent cell line cell (2)
Plant cell (2)
Seed (2)
Urine (2)
Adipose tissue (1)
Blood plasma (1)
Breast (1)
Breast cancer cell (1)
Breast cancer cell line (1)
Cardiac muscle cell (1)
Cell line cell (1)
Colon (1)
Conjunctiva (1)
Early embryonic cell (1)
Embryo (1)
Fibroblast (1)
Heart (1)
Hepatocyte (1)
Intervertebral disc (1)
Leukocyte (1)
Liver (1)
T cell (1)

Disease

Breast cancer (6)
Lymphoma (2)
Acute leukemia (1)
Cardiovascular system disease (1)
Celiac disease (1)
Cell type cancer (1)
Colon cancer (1)
Colorectal cancer (1)
Diabetes mellitus (1)
Disease free (1)
Dry eye syndrome (1)
Kidney disease (1)
Lymphoblastic lymphoma (1)
Malignant neoplasm of ovary (1)
Metabolic dysfunction-associated steatotic liver disease (1)
Obesity (1)
Pancreatic ductal carcinoma (1)
Parkinson's disease (1)
Scoliosis (1)
Severe acute respiratory syndrome (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (60)
Shotgun proteomics (31)
Bottom-up proteomics (13)
Mass spectrometry (9)
SWATH MS (7)
Affinity purification coupled with mass spectrometry proteomics (5)
Data-dependent acquisition (5)
Gel-based experiment (5)
Mass spectrometry assay (4)
Data-independent acquisition (2)
Top-down proteomics (2)
ILLUMINA, Illumina HiSeq 2500 (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 2500, ILLUMINA (1)
SRM/MRM (1)

Instrument Platform

LTQ Orbitrap Velos (5)
Liquid Chromatography MS - positive - reverse phase (5)
Orbitrap Fusion Lumos (4)
Q Exactive (4)
Liquid Chromatography MS - negative - reverse phase (4)
Illumina NovaSeq 6000 (3)
Illumina HiSeq 2500 (2)
6540 Q-TOF LC/MS (Agilent) (2)
Liquid Chromatography MS - alternating - hilic (2)
Agilent microarray Scanner (1)
Agilent Microarray Hybridization Chamber Kit and Hybridization oven rotator (1)
Agilent miRNA Complete Labeling and Hyb Kit (1)
Extraction kit (1)
Illumina NovaSeq X (1)
Agilent NGS Workstation (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 4000 (1)
LTQ Orbitrap Elite (1)
Q Exactive HF-X (1)
5975C Series GC/MSD (Agilent) (1)
Gas Chromatography MS - (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Liquid Chromatography MS - positive - hilic (1)
TSQ Quantum GC (Thermo Scientific) (1)
TripleTOF 5600 (AB Sciex) (1)
Applied biosystems / mds sciex 4700 proteomics analyzer (1)
Applied biosystems / mds sciex q trap (1)
Applied biosystems / mds sciex qstar (1)
Thermo lcq deca (1)

Publication Date

2022 (15)
2023 (15)
2021 (14)
2026 (13)
2013 (10)
2025 (10)
2014 (9)
2019 (8)
2024 (8)
2012 (7)
2015 (6)
2010 (4)
2017 (4)
2018 (4)
2016 (3)
2020 (3)
2011 (2)
2007 (2)

CHEBI ID

CHEBI:7916 (5)
CHEBI:17154 (4)
CHEBI:17568 (4)
CHEBI:27266 (4)
CHEBI:30769 (4)
CHEBI:15428 (3)
CHEBI:15728 (3)
CHEBI:15741 (3)
CHEBI:15756 (3)
CHEBI:16020 (3)
CHEBI:16040 (3)
CHEBI:16199 (3)
CHEBI:16335 (3)
CHEBI:16610 (3)
CHEBI:16704 (3)
CHEBI:16708 (3)
CHEBI:16737 (3)
CHEBI:16750 (3)
CHEBI:16811 (3)
CHEBI:16870 (3)
CHEBI:16958 (3)
CHEBI:17126 (3)
CHEBI:17268 (3)
CHEBI:17311 (3)
CHEBI:17368 (3)
CHEBI:17497 (3)
CHEBI:17509 (3)
CHEBI:17533 (3)
CHEBI:17596 (3)
CHEBI:17712 (3)

Metabolite Name

4-Guanidinobutanoic acid (2)
AICAR (2)
AMP (2)
Adenine (2)
Adenosine (2)
Aspartate (2)
Butyrylcarnitine (2)
Citrate (2)
Fumarate (2)
Glucosamine (2)
Glutamate (2)
Glutamine (2)
Glycerophosphocholine (2)
Guanosine (2)
Isoleucine (2)
L-alanine (2)
L-lysine (2)
L-serine (2)
L-threonine (2)
Malate (2)
Methionine (2)
Methionine sulfoxide (2)
Ornithine (2)
Pantothenic Acid (2)
Pantothenic acid (2)
Phytocassane B (2)
Spermidine (2)
Succinyladenosine (2)
Tyrosine (2)
Uracil (2)

Modification

2x(15)N labeled L-lysine (2)
4x(15)N labeled L-arginine (2)
N6 (1)
N6-dimethyl-L-lysine (1)
Not available (1)

Study type

Transcription profiling by array (21)
RNA-seq of coding RNA (5)
ChIP-seq (3)
Unknown experiment type (2)
Transcription profiling by RT-PCR (2)
Comparative genomic hybridization by array (2)
DNA-seq (2)
RNA-seq of non coding RNA (2)
MicroRNA profiling by high throughput sequencing (1)
Spatial transcriptomics by high-throughput sequencing (1)
Single nucleus RNA sequencing (1)
MicroRNA profiling by array (1)
Genotyping by high throughput sequencing (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2025 (250)
2022 (232)
2023 (208)
2024 (203)
2021 (203)
2020 (171)
2018 (122)
2019 (101)
2017 (88)
2016 (70)
2015 (55)
2014 (44)
2013 (42)
2026 (40)
2012 (28)
2011 (27)
2008 (14)
2010 (12)
2009 (10)
2007 (4)
2006 (2)
2005 (2)
2004 (1)

Lab affiliation

1VIB Center for Medical Biotechnology, VIB, Ghent, 9052, Belgium 2Department of Biomolecular Medicine, Ghent University, Ghent, 9052, Belgium (2)
Faculty of Health Sciences, University of Macau, Macau, China (2)
Harvard medical school (2)
Lung and Vascular Inflammation Section, Laboratory of Allergic Diseases, NIAID/NIH Bethesda, MD 20892, USA (2)
School of biological Sciences, Nanyang Technological University, Singapore 637551 (2)
1 VIB Center for Medical Biotechnology, VIB, Ghent, East Flanders, 9052, Belgium 2 Department of Biomolecular Medicine, Ghent University, Ghent, East Flanders, 9052, Belgium (1)
1) Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center (MDACC), Houston, TX 77030, USA 2) Proteomics Core Facility, Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center (MDACC), Houston, TX 77030, USA 3) Metabolomics Core Facility, Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center (MDACC), Houston, TX 77030, USA (1)
1Lester and Sue Smith Breast Center and Dan L. Duncan Comprehensive Cancer Center, Baylor College of Medicine, Houston, TX 77030, USA (1)
Analytical Chemistry Lab, Istituto Italiano di Tecnologia, Via Morego 30, 16163, Genova, Italy (1)
Associate Professor Developmental and Regenerative Biology School of Biomedical Sciences Faculty of Medicine The Chinese University of Hong Kong (1)
Cancer Science Institute of Singapore (CSI), National University of Singapore (NUS) (1)
Cancer Science Institute of Singapore, National University of Singapore, Singapore (1)
Chan Zuckerberg Biohub (1)
Chan Zuckerberg Biohub, Stanford, CA 94025, USA (1)
Chan Zuckerberg Biohub, Stanford, CA, USA (1)
Department of Biochemistry, Albert Einstein College of Medicine (1)
Department of Bioengineering, Stanford University, Stanford, CA 94305, USA Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA 94305, USA Chan Zuckerberg Biohub, San Francisco, CA 94158 (1)
Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, Zurich, Switzerland. (1)
Department of Cancer Sciences, Cleveland Clinic, 9500 Euclid Avenue, NE60, Cleveland, OH, 44195, USA. (1)
Department of Cardiovascular & Metabolic Sciences, Cleveland Clinic Foundation, USA (1)
Department of Chemical & Systems Biology, Stanford University (1)
Department of Chemistry, University of Toronto, 80 St. George Street, Toronto, ON, M5S 3H6, Canada Donnelly Centre for Cellular and Biomolecular Research, University of Toronto, 160 College Street, Toronto, ON, M5S 3E1, Canada Institute of Biomedical Engineering, University of Toronto, 164 College Street, Toronto, ON, M5S 3G9, Canada. (1)
Department of Medicine, Division of Nephrology, Icahn School of Medicine at Mount Sinai, New York, NY, USA. (1)
Department of Pathology, Johns Hopkins University School of Medicine (1)
Department of Systems Biology, City of Hope Comprehensive Cancer Center, Monrovia, CA, USA (1)
Department of Translational Hematology and Oncology Research, Taussig Cancer Institute, Cleveland Clinic; Cleveland, OH. (1)
Department of cell biology, Harvard Medical School (1)
Early Detection and Prevention, Translational Genomics Research Institute, Phoenix, AZ  Integrated Mass Spectrometry Shared Resource, City of Hope Comprehensive Cancer Center, Duarte, CA  (lab head) (1)
Endowed Professor, School of Biomedical Sciences, THe University of Hong Kong (1)
Ichan School of Medicine at Mount Sinai (1)

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Autocatalytic photoredox Chan-Lam coupling of free diaryl sulfoximines with arylboronic acids.

Not available

S-EPMC7876119 | biostudies-literature

Enantioselective Chan-Lam <i>S</i>-Arylation of Sulfenamides.

Not available

S-EPMC12643117 | biostudies-literature

Steady state isotope tracing in C. elegans (GC-MS analyses)

The metabolic network, composed of thousands of metabolic reactions, is essential for any organism. Despite its importance, a systems level understanding of how metabolic network is wired by reactions that carry flux in unperturbed condition and rewired by transcriptionally activating or repressi...

2024-12-03 | MTBLS11742 | MetaboLights

Steady state isotope tracing in C. elegans (LC-MS analyses)

2024-12-03 | MTBLS11741 | MetaboLights

Chan-Chuang and resistance exercise for drug rehabilitation: a randomized controlled trial among Chinese male methamphetamine users.

Not available

S-EPMC10642185 | biostudies-literature

Differential role of sphingomyelin in influenza virus, rhinovirus and SARS-CoV-2 infection of Calu-3 cells

Host cell lipids play a pivotal role in the pathogenesis of respiratory virus infection. However, a direct comparison of the lipidomic profile of influenza virus and rhinovirus infections is lacking. In this study, we first compared the lipid profile of influenza virus and rhinovirus infection in a ...

2022-11-15 | MTBLS2352 | MetaboLights

Linked PNPLA3 polymorphisms confer susceptibility to nonalcoholic steatohepatitis and decreased viral load in chronic hepatitis B.

Not available

S-EPMC4515841 | biostudies-literature

Thrombopoietin (TPO) protects against heart damage induced by doxorubicin and infarction in rat models

In order to examine the mechanism of TPO on cardiac protection against DOX damage, we have employed whole genome microarray expression profiling as a discovery platform to identify genes with the potential to delineate the TPO cardioprotective mechanism against DOX-induced cardiomyopathy Dox and TPO...

ORGANISM(S): Rattus norvegicus

2010-12-29 | E-GEOD-15449 | biostudies-arrayexpress

Targeting the SREBP-dependent lipidomic reprogramming by virus infection for broad-spectrum therapeutic intervention

Viruses are obligate intracellular parasites that exploit the host metabolic machineries to meet their extraordinary biosynthetic demands. Integrative transcriptomic and lipidomic profiling confirmed that Middle East respiratory syndrome coronavirus (MERS-CoV) infection reprograms the host lipid met...

2018-11-26 | MTBLS762 | MetaboLights

High HDL-C and high LDL-C are risk factors of pterygium in a population-based cross-sectional study in Southern China: the Dongguan Eye Study

Not available

S-EPMC9171277 | biostudies-literature

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