Zhang Fa F - OmicsDI

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Unknown (567)
Proteomics (163)
Transcriptomics (79)
Metabolomics (17)
Genomics (14)
Multiomics (1)

Organisms

Homo sapiens (134)
Mus musculus (59)
Arabidopsis thaliana (8)
Rattus norvegicus (4)
Oryza sativa (4)
Escherichia coli (3)
Saccharomyces cerevisiae (3)
Caenorhabditis elegans (2)
Drosophila melanogaster (2)
Cryptosporidium parvum (1)
Aplysia californica (1)
Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S (1)
Synechocystis sp. PCC 6803 (1)
Gossypium hirsutum (1)
Pan troglodytes (1)
Biomphalaria glabrata (1)
Xenopus laevis (1)
Zea mays (1)
Schizosaccharomyces pombe (1)
Mycobacterium tuberculosis (1)
Streptococcus pneumoniae (1)
Sus scrofa (1)
Danio rerio (1)
cellular organisms (1)
1720309 (1)
298176 (1)
Acer (1)
Aeromonas veronii bv. sobria (1)
Carya cathayensis (1)
Chlamydomonas reinhardtii (1)

Repository

pride (160)
biostudies-arrayexpress (89)
MetaboLights (17)
EGA (4)
iProX (1)
jPOST (1)
MassIVE (1)

Tissue

Cell culture (42)
Epithelial cell (13)
Liver (12)
Blood plasma (11)
Brain (10)
Lung (9)
Cell suspension culture (6)
Plant cell (5)
Heart (4)
Leaf (4)
Permanent cell line cell (4)
Testis (4)
Whole body (4)
Blood cell (3)
Fibroblast (3)
Pancreas (3)
Skeletal muscle cell line (3)
Spleen (3)
Stem cell (3)
B cell (2)
Blood serum (2)
Colon (2)
Diploid cell (2)
Early embryonic cell (2)
Epithelial cell of pancreas (2)
Kidney (2)
Macrophage (2)
Muscle cell (2)
Pancreatic adenocarcinoma cell line (2)
Primary cell (2)

Disease

Disease free (7)
Breast cancer (4)
Colon cancer (4)
Acute leukemia (3)
Cervix carcinoma (3)
Melanoma (3)
Hepatocellular carcinoma (2)
Lung cancer (2)
Pancreatic cancer (2)
Pancreatic ductal carcinoma (2)
Wounds and Injuries (2)
Raji Burkitt's lymphoma (1)
Pancreatic tumor (1)
Prostate cancer (1)
Normal (1)
Alzheimer's disease (1)
Amyotrophic lateral sclerosis (1)
Arrhythmogenic right ventricular cardiomyopathy (1)
Arthritis (1)
Autism spectrum disorder (1)
Brain cancer (1)
Cerebrovascular disease (1)
Childhood extraosseous osteosarcoma (1)
Cholangiocarcinoma (1)
Chronic bronchitis (1)
Embryonal rhabdomyosarcoma (1)
Female infertility of uterine origin (1)
Fibrosarcoma (1)
Glioblastoma (1)
Head and neck cancer (1)

Technology Type

Mass Spectrometry (160)
Shotgun proteomics (88)
Bottom-up proteomics (29)
Data-dependent acquisition (23)
Mass spectrometry (13)
Affinity purification coupled with mass spectrometry proteomics (13)
Gel-based experiment (10)
SWATH MS (7)
Data-independent acquisition (6)
Top-down proteomics (6)
Mass spectrometry assay (5)
Chemical cross-linking coupled with mass spectrometry proteomics (5)
Illumina HiSeq 2500 (1)
NMR spectroscopy (1)
All-ion fragmentation (1)
DiaPASEF (1)
Glycoproteomics (1)
Metaproteomics (1)
Proteogenomics (1)
RNA mass spectrometry (1)
SRM/MRM (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (4)
Liquid Chromatography MS - positive - reverse phase (4)
Illumina NovaSeq 6000 (3)
NextSeq 500 (3)
MA900, Sony (2)
10x Chromium Controller (2)
Illumina HiSeq 2500 (2)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (2)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (2)
Liquid Chromatography MS - negative - reverse-phase (2)
Liquid Chromatography MS - positive - reverse-phase (2)
Illumina HiSeq 2000 (1)
Illumina HiSeq 4000 (1)
LTQ Orbitrap Velos (1)
Q Exactive (1)
Exactive (Thermo Scientific) (1)
Flow injection analysis MS – POS (1)
Gas Chromatography MS - positive - medium polarity - Flame ionisation detector MS - positive (1)
Liquid Chromatography MS - Negative (LC-MS (NEG)) (1)
Liquid Chromatography MS - Positive (LC-MS (POS)) (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - alternating - reverse-phase (1)
Liquid Chromatography MS - negative (1)
Liquid Chromatography MS - positive (1)
Liquid Chromatography MS – NEG (1)
Liquid Chromatography MS – POS (1)
Liquid Chromatography Tandem MS (LC-MS/MS) (1)
Nuclear Magnetic Resonance (NMR) - (1)
TripleTOF 5600 (AB Sciex) (1)

Publication Date

2025 (28)
2026 (27)
2022 (26)
2021 (24)
2023 (18)
2024 (18)
2020 (17)
2012 (16)
2014 (14)
2019 (13)
2016 (12)
2015 (11)
2009 (10)
2018 (7)
2013 (7)
2011 (7)
2010 (6)
2008 (5)
2017 (2)
2004 (1)

CHEBI ID

CHEBI:15756 (4)
CHEBI:15843 (4)
CHEBI:16196 (4)
CHEBI:64563 (4)
CHEBI:15603 (3)
CHEBI:15727 (3)
CHEBI:15891 (3)
CHEBI:16015 (3)
CHEBI:16414 (3)
CHEBI:16467 (3)
CHEBI:16704 (3)
CHEBI:16828 (3)
CHEBI:16870 (3)
CHEBI:16919 (3)
CHEBI:17154 (3)
CHEBI:17295 (3)
CHEBI:17351 (3)
CHEBI:17368 (3)
CHEBI:17712 (3)
CHEBI:17895 (3)
CHEBI:18132 (3)
CHEBI:18344 (3)
CHEBI:27897 (3)
CHEBI:28044 (3)
CHEBI:28716 (3)
CHEBI:28790 (3)
CHEBI:28834 (3)
CHEBI:32805 (3)
CHEBI:132542 (2)
CHEBI:15354 (2)

Metabolite Name

Xanthine (4)
Taurine (3)
Uridine (3)
2-Hydroxyphenylacetic acid (2)
2-hydroxyglutaric acid (2)
4-Hydroxyphenylacetic acid (2)
5-Hydroxyindoleacetate (2)
Arachidonic acid (2)
Azelaic acid (2)
Caffeic acid (2)
Cholic acid (2)
Citric acid (2)
Deoxycholic acid (2)
Fumaric acid (2)
Genistein (2)
Glutamine (2)
Glutaric acid (2)
Glycodeoxycholic acid (2)
Guanidinopropionic acid (2)
Kynurenic acid (2)
L-Palmitoylcarnitine (2)
LPC 16:0 (2)
LPE 18:2 (2)
Methylmalonic acid (2)
N-Acetyl-L-phenylalanine (2)
Naringenin (2)
Nervonic acid (2)
O-oleoylcarnitine (2)
Ornithine (2)
Pantothenic acid (2)

Modification

Not available (1)

Study type

Transcription profiling by array (50)
RNA-seq of coding RNA (11)
ChIP-seq (9)
Comparative genomic hybridization by array (5)
ChIP-chip by tiling array (3)
RNA-seq of coding RNA from single cells (3)
Cell line - High-throughput sequencing (2)
Genotyping by array (2)
Unknown experiment type (1)
ATAC-seq (1)
Other (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2022 (66)
2021 (66)
2025 (66)
2024 (58)
2023 (51)
2018 (39)
2020 (39)
2019 (36)
2017 (35)
2016 (32)
2015 (30)
2014 (26)
2013 (25)
2012 (22)
2009 (15)
2011 (13)
2008 (11)
2026 (11)
2010 (7)
2007 (5)
2004 (1)
2003 (1)
2002 (1)

Lab affiliation

Department of Medical Biochemistry and Microbiology, Uppsala University, Uppsala, Sweden. (4)
Guangzhou Medical University (3)
Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (2)
Institute of Medical Biology, Chinese Academy of Medical Science and Peking Union Medical School, Kunming, China. (2)
Key Laboratory of Protein and Peptide Pharmaceuticals & Laboratory of Proteomics, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China (2)
Shanghai Institute of Thoracic Oncology, Shanghai Chest Hospital, Shanghai Jiao Tong University, Shanghai 200030 (2)
1. Center for Medical Biotechnology, VIB, Ghent, Belgium 2. Department for Biomolecular Medicine, Ghent University, Ghent, Belgium 3. VIB Proteomics Core, VIB, Ghent, Belgium (1)
1. Center for Medical Biotechnology, VIB, Ghent, Belgium. 2. Department for Biomolecular Medicine, Ghent University, Ghent, Belgium 3. VIB Proteomics Core, VIB, Ghent, Belgium (1)
1Gavin Herbert Eye Institute –Brunson Center for Translational Vision Research, Department of Ophthalmology and Visual Sciences, University of California Irvine, Irvine, CA 92697, USA 2Department of Physiology and Biophysics, University of California Irvine, Irvine, CA 92697, USA 3Department of Chemistry, University of California Irvine, Irvine, CA 92697, USA 4Department of Molecular Biology and Biochemistry, University of California Irvine, Irvine, CA 92697, USA (1)
1VIB Center for Medical Biotechnology, VIB, Ghent, 9052, Belgium 2Department of Biomolecular Medicine, Ghent University, Ghent, 9052, Belgium (1)
Agronomy College, Henan Agricultural University, China (1)
Amgen Inc. (1)
Analytical Chemistry Lab, Istituto Italiano di Tecnologia, Via Morego 30, 16163, Genova, Italy (1)
Assistant Professor of Pediatrics Assistant Professor of Pharmacology & Toxicology Indiana University School of Medicine (1)
Associate Professor, Department of Biomedical Sciences,Affiliated with The Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen. (1)
Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS), TUM School of Life Sciences, Technical University of Munich, 85354 Freising, Germany (1)
Beijing Institute of Technology (1)
Beijing Tongren Hospital, Capital Medical University (1)
Beijing proteome research center, Beijing, China (1)
Bio-X Institutes, Key Laboratory for the Genetics of Developmental and Neuropsychiatric Disorders, Ministry of Education, Shanghai Jiao Tong University, Shanghai, 200030, China (lab head) (1)
Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing 100081, China (1)
CAS Center for Excellence in Molecular Plant Science, Chinese Academic on Science (1)
CAS Key Laboratory of Separation Sciences for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China (1)
CAS Key Laboratory of Tropical Marine Bio-resources and Ecology and Guangdong Provincial Key Laboratory of Applied Marine Biology, South China Sea Institute of Oceanology, Chinese Academy of Science. Guangzhou, China (1)
Cancer Research UK Manchester Institute Systems Oncology (1)
Capital Medical University (1)
Center for Desert Agriculture 4700 King Abdullah University of Science and Technology Thuwal 23955-6900 Kingdom of Saudi Arabia (1)
Center of Growth, Metabolism and Aging, Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, 610064, China (1)
Centre for Haemato-oncology, Barts Cancer Institute, Queen Mary University of London, London, EC1M6BQ, UK (1)
Changchun Veterinary Research Institute (1)

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Gut microbiota-mediated histidine deficiency drives testicular ferroptosis induced by bisphenol F exposure

Bisphenol F (BPF), a widespread environmental contaminant and a major substitute for the restricted bisphenol A (BPA), has raised increasing concerns regarding its potential male reproductive health risks, yet its underlying mechanisms remain poorly understood. This study investigates t...

2026-05-26 | MTBLS13997 | MetaboLights

An Embedding 2D/3D Heterostructure Enables High-Performance FA-Alloyed Flexible Perovskite Solar Cells with Efficiency over 20.

Not available

S-EPMC8596135 | biostudies-literature

Oxymetholone therapy of Fanconi anemia suppresses osteopontin transcription and induces hematopoietic stem cell cycling

We used Fancd2-/- mice to understand its mechanism of action. Transcriptome analysis of cKit+ Sca1+ Lin- (KSL) cells discovered that only four genes changed their expression levels significantly after chronic OXM administration in both Fancd2−/− and wild-type mice: mKi67 and Cenpf were up-regualted ...

ORGANISM(S): Mus musculus

2015-01-06 | E-GEOD-58724 | biostudies-arrayexpress

Knockdown of mu-calpain in Fanconi anemia, FA-A, cells by siRNA restores alphaII spectrin levels and corrects chromosomal instability and defective DNA interstrand cross-link repair.

Not available

S-EPMC2899890 | biostudies-literature

Macrophage SH3GLB1 is required for Rab7-1 mediated mitophagy in inflammation during acute lung injury

Acute lung injury (ALI) accompanied by an inflammatory response is an important complication after drowning. Macrophage activation and polarization are implicated in the inflammatory process of lipopolysaccharide (LPS)-induced ALI (LPS-ALI), but little is known about drowning-induced ALI (drowning-A...

ORGANISM(S): Mus musculus (Mouse)

2026-02-10 | PXD073650 | Pride

Complex structures of Rsu1 and PINCH1 reveal a regulatory mechanism of the ILK/PINCH/Parvin complex for F-actin dynamics.

Not available

S-EPMC7909951 | biostudies-literature

Linked PNPLA3 polymorphisms confer susceptibility to nonalcoholic steatohepatitis and decreased viral load in chronic hepatitis B.

Not available

S-EPMC4515841 | biostudies-literature

Folate regulation of planar cell polarity pathway and F-actin through folate receptor alpha.

Not available

S-EPMC10754249 | biostudies-literature

Glyco-CPLL: an integrated method for in-depth and comprehensive N-glycoproteome profiling of human plasma

N-glycoproteins are involved in various biological processes. Certain distinctive glycoforms on specific glycoproteins enhance the specificity and/or sensitivity of cancer diagnosis. Therefore, the characterization of plasma N-glycoproteome is essential for new biomarker discovery. Absence of suitab...

ORGANISM(S): Homo sapiens (Human)

2020-01-09 | PXD016428 | Pride

Mass spectrometry papillary thyroid carcinoma n-glycoproteomics combinatorial peptide ligands library

Flavor, Lipid, and Transcriptomic Profiles of Chinese Wagyu Beef Cuts: Insights into Meat Quality Differences.

Not available

S-EPMC11899191 | biostudies-literature

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840 Results

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