Zhang Ji J - OmicsDI

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Unknown (6023)
Proteomics (149)
Transcriptomics (38)
Metabolomics (21)
Genomics (12)
Genomic (1)
Multiomics (1)

Organisms

Aerococcus urinae NBRC 15544 = CCUG 36881 (82)
Alteromonadales (82)
Bacteria (82)
Canis lupus familiaris (82)
Carya cathayensis (82)
Cnidaria (82)
Ectopseudomonas oleovorans CECT 5344 (82)
Ensifer adhaerens (82)
Enterococcus faecalis (82)
Globicatella sanguinis (82)
Halictus scabiosae (82)
Histomonas meleagridis (82)
Homo sapiens (65)
Mus musculus (24)
Arabidopsis thaliana (4)
Rattus norvegicus (3)
Saccharomyces cerevisiae (2)
Rattus rattus (2)
Paralichthys olivaceus (1)
Macaca mulatta (1)
Zea mays (1)
Plasmodium falciparum (1)
Sus scrofa (1)
Haemaphysalis longicornis (1)
Mytilus coruscus (1)
Oryza sativa (1)
Prunus avium (1)
Pyricularia oryzae 70-15 (1)
Severe acute respiratory syndrome coronavirus 2 (1)
Tachysurus vachellii (1)

Repository

pride (82)
iProX (57)
biostudies-arrayexpress (40)
MetaboLights (21)
EGA (9)
MassIVE (9)
dbGaP (1)
PanoramaPublic (1)
ENA (1)

Tissue

Cell culture (18)
Liver (8)
Plant cell (5)
Testis (5)
Bone marrow (3)
Brain (3)
Epithelial cell (3)
Leaf (3)
Skin (3)
Smooth muscle cell (3)
Stem cell (3)
Whole body (3)
Embryonic stem cell (2)
Hepatocyte (2)
Keratinocyte (2)
Lung (2)
T cell (2)
Thyroid gland (2)
Bladder cell (1)
Blood cell (1)
Blood plasma (1)
Blood serum (1)
Cell suspension culture (1)
Cerebellum (1)
Colon (1)
Early embryonic cell (1)
Embryo (1)
Fibroblast (1)
Gill (1)
T-cell acute lymphoblastic leukemia cell (1)

Disease

Breast cancer (2)
Non-alcoholic steatohepatitis (2)
Acute leukemia (1)
Brain glioblastoma multiforme (1)
Cardiovascular system disease (1)
Colonic disease (1)
Fragile X syndrome (1)
Fungal infectious disease (1)
Liver cancer (1)
Malignant neoplasm of ovary (1)
Pancreatic cancer (1)
Stomach cancer (1)
Thyroid cancer (1)
Urinary bladder cancer (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (82)
Shotgun proteomics (42)
Mass spectrometry (18)
Bottom-up proteomics (15)
Data-dependent acquisition (10)
Affinity purification coupled with mass spectrometry proteomics (5)
Gel-based experiment (5)
Top-down proteomics (5)
NMR spectroscopy (2)
Proteogenomics (2)
SWATH MS (2)
Illumina HiSeq 2000 (1)
Mass spectrometry assay (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Data-independent acquisition (1)
DiaPASEF (1)
SRM/MRM (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (11)
Liquid Chromatography MS - negative - reverse phase (9)
LTQ Orbitrap Elite (6)
Q Exactive (2)
Gas Chromatography MS - (2)
Bruker (2)
Computater Servers UPPMAX-SNIC. (1)
Illumina Tru-seq RNA (1)
NanoDrop spectrophotometer (NanoDrop Technologies, Wilmington, DE) (1)
Dynamic light scattering and zeta potential. The experiments were performed on a Malvern Zetasizer NanoZS instrument using a He-Ne laser (Max, 5 mW) at 633 nm. (1)
Illumina HiSeq 2500 (1)
Orbitrap Elite mass spectrometer(Thermo) (1)
Orbitrap Fusion Lumos (1)
Gas Chromatography MS - positive - medium polarity - Agilent 6890 GC - LECO Pegasus III TOF MS (LECO) (1)
Quattro micro API (Waters) (1)
GCMS-QP2010 Plus (Shimadzu) (1)
Varian (1)
Agilent 5975E GC/MSD (Agilent) (1)
API 4000 QTRAP (AB Sciex) (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)
Unspecified (1)

Publication Date

2022 (32)
2025 (28)
2023 (18)
2024 (17)
2021 (15)
2015 (8)
2011 (8)
2010 (8)
2020 (8)
2026 (5)
2013 (4)
2012 (4)
2017 (4)
2014 (3)
2009 (3)
2019 (3)
2007 (2)
2006 (2)
2018 (2)
2016 (2)
2008 (1)

CHEBI ID

CHEBI:15428 (9)
CHEBI:15756 (9)
CHEBI:28842 (8)
CHEBI:17596 (8)
CHEBI:17368 (8)
CHEBI:28044 (7)
CHEBI:55328 (7)
CHEBI:17509 (7)
CHEBI:17568 (7)
CHEBI:16919 (7)
CHEBI:27897 (7)
CHEBI:17895 (7)
CHEBI:30769 (7)
CHEBI:15891 (6)
CHEBI:17821 (6)
CHEBI:16040 (6)
CHEBI:15741 (6)
CHEBI:17268 (6)
CHEBI:17203 (6)
CHEBI:16750 (6)
CHEBI:18012 (6)
CHEBI:16449 (6)
CHEBI:30915 (6)
CHEBI:16335 (6)
CHEBI:15354 (6)
CHEBI:17295 (6)
CHEBI:64563 (6)
CHEBI:15584 (5)
CHEBI:64566 (5)
CHEBI:17992 (5)

Metabolite Name

Isocitric acid (3)
Alanine (3)
Lactic acid (3)
Citric acid (3)
Succinic acid (3)
Fumaric acid (3)
Myo-inositol (3)
D-Glucose (3)
Inosine (3)
Hypoxanthine (3)
D-Glyceric Acid (2)
2-Hydroxyisocaproic Acid (2)
Hoslundal (2)
Phyllospadine (2)
(+/-)5-HEPE (2)
Threonate (2)
Juniperic acid (2)
4-formyl Indole (2)
(S)-(-)-Perillyl alcohol (2)
3-hydroxyphenylacetic acid (2)
3,4-dihydroxyphenylacetic acid (2)
Arbutin (2)
Glyceric acid (2)
Dehydroascorbic Acid (2)
Leukotriene B4 (2)
Heptadecanoic acid (2)
Cholic acid (2)
Gluconic acid (2)
Phenyl beta-D-glucopyranoside (2)
D-Fructose (2)

First Public Date

2017 (1)

Study type

Transcription profiling by array (27)
RNA-seq of coding RNA (5)
RNA-seq of non coding RNA (4)
Unknown experiment type (1)
ChIP-seq (1)
Methylation profiling by array (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2025 (976)
2022 (840)
2023 (745)
2024 (713)
2021 (638)
2020 (475)
2019 (316)
2018 (294)
2017 (222)
2016 (206)
2015 (157)
2026 (125)
2014 (114)
2013 (68)
2012 (56)
2011 (40)
2010 (29)
2009 (14)
2008 (14)
2007 (9)
2006 (4)
2003 (4)
2005 (3)
2004 (1)

Lab affiliation

Medical Basic Research Innovation Center for Cardiovascular and Cerebrovascular Diseases, Ministry of Education, Nanjing Medical University, Nanjing, Jiangsu, China (3)
Shanghai Institute of Hematology, State Key Laboratory of Medical Genomics, Collaborative Innovation Center of Hematology, National Research Center for Translational Medicine at Shanghai, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai 200000, China (3)
BMI, Faculty of Medicine, University of Ottawa, Canada (2)
Beijing Key Laboratory for Dairy Cow Nutrition, Beijing University of Agriculture (2)
Beijing Key Laboratory of Protein Posttranslational Modifications and Cell Function, Department of Biochemistry and Biophysics, School of Basic Medical Sciences, Peking University Health Science Center, Beijing, 100191, China. (2)
Department of Cardiology, Renmin Hospital of Wuhan University, Wuhan 430060, China (2)
Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China (2)
Nanjing Medical University (2)
Ruijin Hospital, Shanghai Jiao Tong University School of Medicine (2)
Shandong University (2)
+8617812007228 (1)
1 Department of Hepatobiliary Surgery, The First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, Anhui, 230001, China. 2 Anhui Province Key Laboratory of Hepatopancreatobiliary Surgery, Hefei, Anhui, 230001, China. 3 Anhui Provincial Clinical Research Center for Hepatobiliary Diseases, Hefei, Anhui, 230001, China. (1)
1) Department of Plant Biochemistry, Ruhr University Bochum, Bochum, Germany 2) School of Biomedical and Healthcare Sciences Plymouth University Drake Circus, Plymouth Devon PL4 8AA United Kingdom (1)
1. Laboratory of Protein and Peptide Pharmaceuticals & Laboratory of Proteomics, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China 2. University of Chinese Academy of Sciences, Beijing 100049, China (1)
Dalian Institute of Chemcial and Physics, China (1)
Dalian Institute of Chemical and Physics, Chinese Academy of Sciences (1)
Department of Biology, Brain Research Center, Southern University of Science and Technology (1)
Department of Burn Surgery, the First Affiliated Hospital of Naval Medical University, Shanghai, People’s Republic of China; Research Unit of key techniques for treatment of burns and combined burns and trauma injury, Chinese Academy of Medical Sciences, Shanghai, China. (1)
Department of Clinic Laboratory, Shanghai Children’s Medical Center, School of Medicine, Shanghai Jiao Tong University, Shanghai, China (1)
Department of Clinical Laboratory, Shanghai Children’s Medical Center, School of Medicine, Shanghai Jiao Tong University (1)
Department of General Surgery, Key Laboratory of Hepatosplenic Surgery, Ministry of Education, The First Affiliated Hospital of Harbin Medical University, Harbin 150001, China. Anhui Province Key Laboratory of Hepatopancreatobiliary Surgery, Hefei, Anhui, 230001, China. Anhui Provincial Clinical Research Center for Hepatobiliary Diseases, Hefei, Anhui, 230001, China. (1)
Department of Hepatobiliary Surgery, Anhui Province Key Laboratory of Hepatopancreatobiliary Surgery, Anhui Provincial Clinical Research Center for Hepatobiliary Diseases, The First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei 230001, China. (1)
Department of Immunobiology, College of Life Science and Technology, Jinan University, Guangzhou, China. (1)
Department of Pathophysiology, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, Rui-Jin Hospital, and State Key Laboratory of Oncogenes and Related Genes and Chinese Academy of Medical Sciences Research Unit (NO.2019RU043), Shanghai Cancer Institute, Shanghai Jiao Tong University School of Medicine, Shanghai 200025, China. (1)
Department of Proteomics and Signal Transduction; Max-Planck Institute of Biochemistry; Martinsried, Bavaria, 82152; Germany (1)
Department of Surgery, University of Michigan, USA (1)
Departments of Medicine (Oncology) and of Chemical and Systems Biology, Stanford School of Medicine, Stanford, CA, USA Stanford Cancer Institute, Stanford, CA, USA (1)
Engineering Research Center of Agricultural Microbiology Technology, Ministry of Education, Heilongjiang University, Harbin 150500, China (1)
Henan Institute of Medical and Pharmaceutical Sciences, Zhengzhou University (1)
Henan University of Science and Technology,College of Clinical Medicine,Luoyang, China, (1)

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The histone methyltransferase Setd2 is indispensable for V(D)J recombination.

Not available

S-EPMC6659703 | biostudies-literature

Chronic ethanol-mediated hepatocyte apoptosis links to decreased TET1 and 5-hydroxymethylcytosine formation.

Not available

S-EPMC6338639 | biostudies-literature

Quantitative time-course profiling of Plasmodium falciparum transcripts and proteins throughout the 48-hour intraerythrocytic developmental cycle

Quantitative studies of the P. falciparum transcriptome have shown that the tightly controlled progression of the parasite through the intraerythrocytic developmental cycle (IDC) is accompanied by a continuous gene expression cascade where most expressed genes exhibit a single transcriptional peak. ...

ORGANISM(S): Plasmodium falciparum

2011-06-07 | E-GEOD-24416 | biostudies-arrayexpress

TNF-α-308 polymorphism and risk of digestive system cancers: a meta-analysis.

Not available

S-EPMC3882423 | biostudies-literature

An integrated approach for structural characterization of Gui Ling Ji by traveling wave ion mobility mass spectrometry and molecular network.

Not available

S-EPMC9029087 | biostudies-literature

Neuropilin-1 maintains dimethylarginine dimethylaminohydrolase 1 expression in endothelial cells, and contributes to protection from angiotensin II-induced hypertension.

Not available

S-EPMC6355070 | biostudies-literature

Diversity of Avian leukosis virus subgroup J in local chickens, Jiangxi, China.