Zhang Ka K - OmicsDI

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Unknown (1419)
Proteomics (29)
Genomics (20)
Metabolomics (20)
Transcriptomics (15)

Organisms

Homo sapiens (42)
Mus musculus (12)
Pteropus alecto (1)
Mycobacterium tuberculosis (1)
Rattus norvegicus (1)
Escherichia coli (1)
Mus (1)

Organisms

Homo sapiens (2)

Repository

pride (23)
biostudies-arrayexpress (19)
MetaboLights (18)
EGA (14)
MassIVE (6)
GNPS (2)
ENA (2)

Tissue

Brain (8)
Cell culture (6)
Epithelial cell (3)
Kidney (3)
Liver (2)
Pancreas (2)
Bile (1)
Bile duct (1)
Blood (1)
Blood plasma (1)
Blood serum (1)
Blood-lymph (1)
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Colon (1)
Erythrocyte (1)
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Lung (1)
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Whole body (1)

Disease

Alzheimer's disease (2)
Brain cancer (2)
Acute leukemia (1)
Childhood extraosseous osteosarcoma (1)
Cholangiocarcinoma (1)
Chronic bronchitis (1)
Colon cancer (1)
Coronavirus infectious disease (1)
Disease free (1)
Embryonal rhabdomyosarcoma (1)
Fibrosarcoma (1)
Head and neck cancer (1)
Lung carcinoma (1)
Malignant mesothelioma (1)
Malignant neoplasm of ovary (1)
Melanoma (1)
Neuroblastoma (1)
Neurofibromatosis 1 (1)
Ovarian serous carcinoma (1)
Pancreatic cancer (1)
Pancreatic ductal adenocarcinoma (1)
Peripheral primitive neuroectodermal tumor (1)
Prostate adenocarcinoma (1)
Renal Wilms' tumor (1)
Retinoblastoma (1)
Stomach cancer (1)
Synovial sarcoma (1)
Uveal melanoma (1)

Technology Type

Mass Spectrometry (23)
Mass spectrometry (14)
Shotgun proteomics (14)
Bottom-up proteomics (6)
NMR spectroscopy (4)
Affinity purification coupled with mass spectrometry proteomics (3)
Data-dependent acquisition (2)
Complete Genomics (COMPLETE_GENOMICS) (1)
Illumina HiSeq 2000 (1)
Affinity proteomics (1)
Gel-based experiment (1)
HDMSE (1)
SRM/MRM (1)
SWATH MS (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (4)
Q Exactive (3)
Liquid Chromatography MS - positive - reverse phase (3)
MicrOTOF-Q II (2)
Bruker (2)
Chemostat (1)
MaXis II (1)
Exactive Plus (1)
LTQ (1)
LTQ Orbitrap Elite (1)
LTQ Orbitrap Velos Pro (1)
Orbitrap Exploris 480 (1)
Q Exactive Plus (1)
5975C Series GC/MSD (Agilent) (1)
Biological experiment negative - Orbitrap velos CID (Thermo Scientific) (1)
Biological experiment negative - QTRAP 4000 (AB Sciex) (1)
Biological experiment positive - Orbitrap velos CID (Thermo Scientific) (1)
Biological experiment positive - QTRAP 4000 (AB Sciex) (1)
Control experiment 1 negative - Orbitrap velos CID (Thermo Scientific) (1)
Control experiment 1 positive - Orbitrap velos CID (Thermo Scientific) (1)
LMJ-SSP/ESI MS (Imaging MS) (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - alternating – hilic (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)
MALDI MS (Imaging MS) (1)
Matrix-assisted laser desorption-ionisation imaging MS - (1)

Publication Date

2023 (10)
2024 (9)
2022 (7)
2011 (5)
2010 (5)
2020 (5)
2025 (5)
2013 (4)
2018 (4)
2017 (3)
2015 (2)
2014 (2)
2007 (2)
2019 (2)
2012 (1)
2026 (1)
2006 (1)

CHEBI ID

CHEBI:15741 (8)
CHEBI:16704 (8)
CHEBI:16811 (8)
CHEBI:17596 (7)
CHEBI:18089 (7)
CHEBI:24898 (7)
CHEBI:28300 (7)
CHEBI:33508 (7)
CHEBI:15428 (6)
CHEBI:15891 (6)
CHEBI:16027 (6)
CHEBI:16449 (6)
CHEBI:16708 (6)
CHEBI:16737 (6)
CHEBI:17154 (6)
CHEBI:17306 (6)
CHEBI:17712 (6)
CHEBI:17750 (6)
CHEBI:17775 (6)
CHEBI:18012 (6)
CHEBI:27266 (6)
CHEBI:28044 (6)
CHEBI:30915 (6)
CHEBI:32816 (6)
CHEBI:78320 (6)
CHEBI:15354 (5)
CHEBI:15724 (5)
CHEBI:16235 (5)
CHEBI:16450 (5)
CHEBI:16919 (5)

Metabolite Name

Isoleucine (5)
Methionine (4)
Acetate (3)
Carnitine (3)
Creatine (3)
Creatinine (3)
Glutamine (3)
Glycine (3)
Hippurate (3)
Inosine (3)
Lactate (3)
Phenylalanine (3)
Putrescine (3)
Taurine (3)
Valine (3)
Acetylcarnitine (2)
Alanine (2)
Arginine (2)
Asparagine (2)
Betaine (2)
Carnosine (2)
Choline (2)
Dimethylamine (2)
Formate (2)
Fumarate (2)
Glycerophosphocholine (2)
Guanine (2)
Histidine (2)
Kynurenine (2)
L-glutamine (2)

First Public Date

2023 (1)
2022 (1)

Study type

Transcription profiling by array (11)
ChIP-seq (4)
ChIP-chip by tiling array (3)
RNA-seq of coding RNA (1)

Release Date

2022 (170)
2021 (153)
2023 (146)
2025 (142)
2020 (130)
2024 (117)
2018 (103)
2019 (75)
2015 (72)
2017 (65)
2016 (59)
2013 (43)
2014 (39)
2011 (28)
2010 (27)
2012 (25)
2026 (14)
2009 (12)
2007 (7)
2008 (6)
2006 (3)
2004 (1)
2002 (1)

Lab affiliation

Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (3)
St. Jude Children's Research Hospital (2)
College of Life Science, Northwest University, Xi’an, 710069, P. R. China (1)
Department of Biochemistry and Stanford Cancer Institute, Stanford University School of Medicine (1)
Department of Cellular and Molecular Pharmacology University of California San Francisco (UCSF) San Francisco, CA 94158 USA (1)
Department of Chemistry and Chemical biology, Northeastern University (1)
Department of Chemistry, University of Washington, Seattle, WA, USA (1)
Department of Gynecologic Oncology and Reproductive Medicine, The University of Texas MD Anderson Cancer Center, Houston, Texas (1)
Department of Obstetrics and Gynecology, Inova Fairfax Medical Campus, Inova Health System (1)
Department of Pharmacology University of North Carolina - Chapel Hill Chapel Hill, NC 27599 (1)
Fred Hutch Cancer Center, Human Biology Division (1)
Head of the department of Proteomics and Signal Transduction at the MPI of Biochemistry (1)
Human Immunological Diseases Section, Laboratory of Clinical Immunology and Microbiology, Division of Intramural Research, NIAID, NIH, Department of Health and Human Services, Unites States Government (1)
Laboratory of Human Genetics of Infectious Diseases, Necker Branch, INSERM U1163, Necker Hospital for Sick Children, Paris, France; University of Paris, Imagine Institute, Paris, France; St. Giles Laboratory of Human Genetics of Infectious Diseases, Rockefeller Branch, The Rockefeller University, New York, NY, USA; Department of Pediatrics, Necker Hospital for Sick Children, AP-HP, Paris, France; Howard Hughes Medical Institute, New York, NY, USA (1)
Neurosurgeon & Senior Scientist Developmental and Stem Cell Biology, The Hospital for Sick Children, Canada (1)
Sequence database group (1)
St Jude Children's Research Hospital (1)
St. Jude Children’s Research Hospital (1)
Weill Cornell Medical College, New York City (1)
Yusuf Hamied Department of Chemistry, University of Cambridge, Cambridge, UK. Cancer Research UK Cambridge Institute, Li Ka Shing Centre, University of Cambridge, Cambridge, UK. School of Clinical Medicine, University of Cambridge, Cambridge, UK. (1)

Tags

xref:PubMed:36542473 (1)
xref:PubMed:37018654 (1)

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Association Between Dietary Vitamin K Intake With Cancer Cachexia and Mortality: NHANES 1999-2018.

Not available

S-EPMC12566881 | biostudies-literature

Genome-wide characterization and expression analysis of HAK K⁺ transport family in Ipomoea.

Not available

S-EPMC7695775 | biostudies-literature

Expression data from patients with advanced ovarian cancer

Integration of several ovarian cancer datasets to identify a reproducible predictors of survival Four microarray datasets from different institutions were reprocessed in a uniform manner, into a single training dataset. Survival analysis was performed and a validation cohort (61 patients from 3 inst...

ORGANISM(S): Homo sapiens

2011-06-15 | E-GEOD-19161 | biostudies-arrayexpress

Regulation of AMP synthesis by a KCTD13 ubiquitin ligase connects 16p11.2 deletion syndrome to a metabolic disorder with autistic features

Madison JM, Duong K, Vieux EF, Iqbal S, Requadt E, Udeshi ND, Fereshetian S, Lewis MC, Gomes AS, Pierce KA, Platt RJ, Zhang F, Campbell AJ, Lal D, Wagner FF, Clish CB, Carr SA, Scolnick EM, Cottrell JR. 2020. Genetic variation of KCTD13 at the 16p11.2 deletion locus and of CUL3 are linked with autis...

ORGANISM(S): Mus Musculus (ncbitaxon:10090)

2020-07-29 | MSV000085846 | MassIVE

Ludwig Institute/UCSD ENCODE project June 2007 Release

The readout of genome information is controlled by transcriptional regulatory elements, but a comprehensive view of the combinatorial control by these DNA sequences, which bind regulatory protein and/or the modified histones in regulating gene transcription, is clearly preliminary. We have developed...

ORGANISM(S): Homo sapiens

2007-06-01 | E-GEOD-7872 | biostudies-arrayexpress

Genome-wide systematic characterization of the HAK/KUP/KT gene family and its expression profile during plant growth and in response to low-K⁺ stress in Saccharum.

Not available

S-EPMC6958797 | biostudies-literature

A small animal model of chronic hepatitis E infection using immunocompromised rats.

Not available

S-EPMC9424580 | biostudies-literature

Hand, foot, and mouth disease in China, 2008-12: an epidemiological study.

Not available

S-EPMC4035015 | biostudies-literature

Sequencing-based counting and size profiling of plasma Epstein-Barr virus DNA enhance population screening of nasopharyngeal carcinoma.