Zhang Ryan R - OmicsDI

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Unknown (400)
Genomics (13)
Transcriptomics (12)
Proteomics (11)
Metabolomics (2)

Organisms

Homo sapiens (21)
Mus musculus (7)
Saccharomyces cerevisiae (1)
Rattus norvegicus (1)

Repository

biostudies-arrayexpress (14)
EGA (11)
MassIVE (8)
jPOST (2)
MetaboLights (2)
pride (1)

Tissue

Pancreas (1)

Disease

Schizophrenia (1)
Type 1 diabetes mellitus (1)

Technology Type

Mass spectrometry (2)
Mass Spectrometry (1)
Shotgun proteomics (1)

Instrument Platform

Q Exactive Plus (2)
TimsTOF Pro (2)
NextSeq 500 (1)
LTQ Orbitrap Velos (1)
Orbitrap Fusion Lumos (1)
Q Exactive (1)
Q Exactive HF (1)
TripleTOF 6600 (1)
Agilent 6520 QTOF (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)

Publication Date

2022 (5)
2023 (3)
2010 (3)
2015 (2)
2014 (2)
2008 (2)
2020 (2)
2016 (1)
2011 (1)
2009 (1)
2003 (1)
2021 (1)
2017 (1)
2018 (1)

CHEBI ID

CHEBI:10033 (1)
CHEBI:10334 (1)
CHEBI:104022 (1)
CHEBI:10587 (1)
CHEBI:107636 (1)
CHEBI:110187 (1)
CHEBI:112 (1)
CHEBI:1148 (1)
CHEBI:116314 (1)
CHEBI:1230 (1)
CHEBI:131381 (1)
CHEBI:131421 (1)
CHEBI:131454 (1)
CHEBI:131659 (1)
CHEBI:131668 (1)
CHEBI:131738 (1)
CHEBI:131888 (1)
CHEBI:131989 (1)
CHEBI:132274 (1)
CHEBI:132996 (1)
CHEBI:133077 (1)
CHEBI:133094 (1)
CHEBI:133096 (1)
CHEBI:133140 (1)
CHEBI:133144 (1)
CHEBI:133657 (1)
CHEBI:134013 (1)
CHEBI:134014 (1)
CHEBI:134021 (1)
CHEBI:134254 (1)

Metabolite Name

(-)-12-hydroxy-9,10-dihydrojasmonic acid (1)
(-)-2,7-Dolabelladiene-6beta,10alpha,18-triol (1)
(-)-8-hydroxy-11E,17-octadecadien-9-ynoic acid (1)
(-)-Cladielline (1)
(-)-Dilophol (1)
(-)-erythro-Anethole glycol 1-glucoside (1)
(-)-erythro-Anethole glycol 2-glucoside (1)
(1R,2R)-3-oxo-2-pentyl-cyclopentanehexanoic acid (1)
(1R,2R,4S)-p-Menthane-1,2,8-triol 8-glucoside (1)
(1S,2S)-3-oxo-2-pentyl-cyclopentanehexanoic acid (1)
(1Z)-N-{(5S)-6-hydroxy-5-[(E)-(1-hydroxybutylidene)amino]hexyl}butanimidic acid (1)
(1Z)-N-{(5S)-6-hydroxy-5-[(E)-(1-hydroxydecylidene)amino]hexyl}decanimidic acid (1)
(1Z)-N-{(5S)-6-hydroxy-5-[(E)-(1-hydroxyhexylidene)amino]hexyl}hexanimidic acid (1)
(1Z,3R)-N-[(5S)-6-(acetyloxy)-5-{(E)-[(3R)-1-hydroxy-3-isocyanobutylidene]amino}hexyl]-3-isocyanobutanimidic acid (1)
(1Z,3R)-N-[(5S)-6-hydroxy-5-{(E)-[(3R)-1-hydroxy-3-isocyanobutylidene]amino}hexyl]-3-isocyanobutanimidic acid (1)
(22E)-3beta-Hydroxy-5alpha-chola-7,22-dien-24-oic Acid (1)
(2E,4Z)-Decadienoylcarnitine (1)
(2R*,3R*)-1,2,3-Butanetriol (1)
(2R,3R,4R)-2-Amino-4-hydroxy-3-methylpentanoic acid (1)
(2S,4S)-Monatin (1)
(3R)-3-[(carboxymethyl)amino]butanoic acid (1)
(3R)-3-[(carboxymethyl)amino]decanoic acid (1)
(3S,5R,6R,7E)-3,5,6-Trihydroxy-7-megastigmen-9-one (1)
(3b,6b,8b,12a)-8,12-Epoxy-7(11)-eremophilene-6-angeloyloxy-8,12-dimethoxy-3-ol (1)
(4E,15E)-Bilirubin (1)
(4E,8E,10E-d18:3)sphingosine (1)
(5alpha,8beta,9beta)-5,9-Epoxy-3,6-megastigmadien-8-ol (1)
(6E,8E,10R,12Z)-10-Hydroxy-3-oxooctadecatrienoic acid (1)
(6E,9E,12E,15E,18E,21E)-tetracosa-6,9,12,15,18,21-hexaenoic acid (1)
(6beta,8alpha)-6-Hydroxy-7(11)-eremophilen-12,8-olide (1)

Study type

Transcription profiling by array (6)
Other (2)
Unknown experiment type (1)
ATAC-seq (1)
ChIP-seq (1)
Methylation profiling by array (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of coding RNA (1)

Release Date

2021 (53)
2022 (48)
2018 (44)
2023 (30)
2025 (30)
2024 (30)
2020 (28)
2014 (21)
2013 (18)
2015 (16)
2019 (16)
2017 (16)
2011 (14)
2016 (12)
2012 (12)
2010 (11)
2009 (6)
2026 (5)
2008 (3)
2003 (1)

Lab affiliation

Pacific Northwest National Laboratory (1)

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Contextualizing the revised Patient Perception of Patient-Centeredness (PPPC-R) scale in primary healthcare settings: a validity and reliability evaluation study.

Not available

S-EPMC10768460 | biostudies-literature

Gene Bionetwork Analysis of Ovarian Primordial Follicle Development

Ovarian primordial follicles are critical for female reproduction and comprise a finite pool of gametes arrested in development. A systems biology approach was used to identify regulatory gene networks essential for primordial follicle development. Transcriptional responses to eight different growth...

ORGANISM(S): Rattus norvegicus

2010-06-13 | E-GEOD-20324 | biostudies-arrayexpress

Clinical and Genomic Characterization of Treatment-Emergent Small-Cell Neuroendocrine Prostate Cancer: A Multi-institutional Prospective Study.

Not available

S-EPMC6366813 | biostudies-literature

Skeletal Muscle Angiopoietin-Like Protein 4 and Glucose Metabolism in Older Adults after Exercise and Weight Loss.

Not available

S-EPMC7570075 | biostudies-literature

ATAC-seq of Mus musculus embryonic cell types in response to Pbx1 knockout

ATAC-seq was performed, mapped, and analyzed as previously described (PMID: 34446717: \\"ATAC-seq was performed on 50,000 cells per replicate as described in Buenrostro et al. (with modifications based on Corces et al.), on EpiSCs and PSM-differentiated cell populations at desired time-points. Libra...

ORGANISM(S): Mus musculus

2023-12-01 | E-MTAB-13407 | biostudies-arrayexpress

Blood phenylalanine reduction reverses gene expression changes observed in a mouse model of phenylketonuria.

Not available

S-EPMC8613214 | biostudies-literature

Precision Medicine in Pancreatic Cancer: Patient-Derived Organoid Pharmacotyping Is a Predictive Biomarker of Clinical Treatment Response.

Not available

S-EPMC9357072 | biostudies-literature

Gene delivery of a modified antibody to Aβ reduces progression of murine Alzheimer's disease.

Not available

S-EPMC6936806 | biostudies-literature

JAX-CNV: A Whole-genome Sequencing-based Algorithm for Copy Number Detection at Clinical Grade Level.