Zhang Xie X - OmicsDI

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Unknown (10839)
Proteomics (284)
Transcriptomics (61)
Genomics (47)
Metabolomics (42)

Organisms

Homo sapiens (116)
Mus musculus (58)
Oryza sativa (5)
Arabidopsis thaliana (3)
Ovis aries (3)
Rattus norvegicus (3)
Escherichia coli (3)
Bemisia tabaci (2)
Zea mays (2)
Capra hircus (2)
Epinephelus fuscoguttatus x Epinephelus lanceolatus (2)
Iridovirus (1)
Epinephelus coioides (1)
Larimichthys crocea (1)
Pinctada fucata (1)
Plutella xylostella (1)
Rhodococcus opacus (1)
Oryza rufipogon (1)
Taenia multiceps (1)
Metarhizium acridum (1)
Mytilus edulis (1)
Dirofilaria immitis (1)
Spodoptera frugiperda (1)
Macaca mulatta (1)
Clonorchis sinensis (1)
Oryza sativa Indica Group (1)
Bacillus subtilis (1)
Setaria italica (1)
Oryza sativa Japonica Group (1)
Drosophila melanogaster (1)

Repository

pride (155)
iProX (117)
biostudies-arrayexpress (70)
MetaboLights (42)
EGA (38)
MassIVE (11)
jPOST (1)

Tissue

Cell culture (44)
Brain (12)
Liver (12)
Testis (11)
Epithelial cell (9)
Permanent cell line cell (7)
Blood plasma (6)
Hepatocyte (6)
Lung (5)
Heart (5)
Spleen (5)
Kidney (5)
Whole body (4)
Leaf (4)
Smooth muscle cell (3)
Urine (3)
Blood serum (3)
Cell suspension culture (3)
Plant cell (3)
Colon (3)
Embryonic stem cell (3)
Embryo (3)
Saliva (2)
Bone marrow (2)
Leukocyte (2)
Fibroblast (2)
Skin (2)
Preosteoblast (1)
Esophageal squamous cell carcinoma cell line (1)
Corolla (1)

Disease

Breast cancer (7)
Hepatocellular carcinoma (4)
Brain cancer (3)
Osteoporosis (2)
Liver cancer (2)
Prostate adenocarcinoma (2)
Cholangiocarcinoma (2)
Disease free (2)
VSV infection (1)
Esophageal disease (1)
Residual chronic schizophrenia (1)
Ischemic stroke (1)
Hemorrhagic stroke (1)
Esophagus adenocarcinoma (1)
Antenatal onset (1)
Hydronephrosis (1)
Thyroid cancer (1)
Stroke (1)
Myopia (1)
Non-small cell lung carcinoma (1)
Esophageal carcinoma (1)
Brain ischemia (1)
Skin cancer (1)
Head and neck squamous cell carcinoma (1)
Myeloproliferative neoplasm (1)
Severe acute respiratory syndrome (1)
Obesity (1)
Alzheimer's disease (1)
Cervix carcinoma (1)
Colon cancer (1)

Technology Type

Mass Spectrometry (155)
Shotgun proteomics (77)
Mass spectrometry (38)
Bottom-up proteomics (23)
Affinity purification coupled with mass spectrometry proteomics (19)
Gel-based experiment (17)
Data-dependent acquisition (10)
Top-down proteomics (6)
Data-independent acquisition (5)
Mass spectrometry assay (4)
MSE (3)
SRM/MRM (3)
Proteogenomics (2)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Olink affinity proteomics (1)
Affinity proteomics (1)
Immunopeptidomics (1)
All-ion fragmentation (1)
SWATH MS (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (18)
Liquid Chromatography MS - positive - reverse phase (16)
Liquid Chromatography MS - negative - hilic (5)
Liquid Chromatography MS - positive - hilic (5)
Illumina HiSeq 2500 (4)
Orbitrap Fusion Lumos (4)
LTQ Orbitrap Velos (3)
6540 Q-TOF LC/MS (Agilent) (3)
Illumina NovaSeq 6000 (2)
Q Exactive (2)
TOF Pegasus HT (LECO) (2)
Xevo G2 QTOF (Waters) (2)
Gas Chromatography MS - positive (2)
Liquid Chromatography MS - alternating - reverse phase (2)
Liquid Chromatography MS - (2)
BD FACSAria™ III (1)
Illumina HiSeq 2000 (1)
Q-Exactive HF-X (1)
Orbitrap Ascend (1)
Liquid Chromatography MS - Negative (LC-MS (NEG)) (1)
Xevo TQ MS (Waters) (1)
Liquid Chromatography MS - alternating – hilic (1)
Capillary electrophoresis MS - positive (1)
Capillary electrophoresis MS - negative (1)
Liquid Chromatography MS - Positive (LC-MS (POS)) (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
5975C Series GC/MSD (Agilent) (1)
Liquid Chromatography MS - negative (1)
Liquid Chromatography MS - positive (1)

Publication Date

2024 (52)
2022 (46)
2025 (41)
2021 (33)
2023 (27)
2026 (19)
2014 (18)
2020 (16)
2017 (13)
2019 (13)
2009 (12)
2016 (9)
2013 (9)
2018 (9)
2015 (8)
2012 (8)
2011 (5)
2010 (4)
2006 (1)

CHEBI ID

CHEBI:17895 (18)
CHEBI:48131 (17)
CHEBI:17295 (16)
CHEBI:16704 (16)
CHEBI:16750 (16)
CHEBI:17154 (15)
CHEBI:17568 (15)
CHEBI:17368 (15)
CHEBI:30769 (15)
CHEBI:30915 (14)
CHEBI:55328 (14)
CHEBI:15756 (14)
CHEBI:15971 (14)
CHEBI:16015 (14)
CHEBI:16040 (14)
CHEBI:17596 (14)
CHEBI:17203 (14)
CHEBI:15843 (13)
CHEBI:16467 (13)
CHEBI:16196 (13)
CHEBI:16737 (13)
CHEBI:18089 (13)
CHEBI:17509 (13)
CHEBI:16919 (13)
CHEBI:16335 (13)
CHEBI:28834 (12)
CHEBI:16359 (12)
CHEBI:16865 (12)
CHEBI:42504 (12)
CHEBI:18050 (12)

Metabolite Name

Uracil (11)
Azelaic acid (11)
Hypoxanthine (10)
Inosine (10)
L-Tyrosine (9)
L-Phenylalanine (9)
Creatine (9)
Guanosine (9)
Uridine (9)
Palmitic acid (8)
Cytosine (8)
Guanine (8)
L-Proline (8)
Adenosine (8)
Cytidine (8)
Pipecolic acid (7)
Spermidine (7)
Nicotinamide (7)
L-Arginine (7)
Choline (7)
Creatinine (7)
Proline (7)
L-Tryptophan (7)
Pantothenic acid (7)
Taurine (7)
Nicotinic acid (6)
Indole (6)
Corticosterone (6)
Hippuric acid (6)
Xanthosine (6)

Modification

6x(2)H labeled dimethylated L-arginine (1)
2x(15)N labeled L-lysine (1)
Not available (1)
4x(15)N labeled L-arginine (1)

Study type

Transcription profiling by array (29)
RNA-seq of coding RNA (19)
Methylation profiling by high throughput sequencing (5)
ChIP-seq (4)
RNA-seq of non coding RNA (4)
Unknown experiment type (3)
Animal - High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
Transcription profiling by RT-PCR (1)
Comparative genomic hybridization by array (1)
MicroRNA profiling by array (1)
RNA-seq of total RNA (1)

Release Date

2025 (1942)
2022 (1549)
2024 (1424)
2023 (1404)
2021 (1197)
2020 (818)
2019 (530)
2018 (407)
2017 (355)
2016 (284)
2026 (277)
2015 (242)
2014 (171)
2013 (111)
2012 (66)
2011 (51)
2009 (29)
2010 (26)
2007 (7)
2006 (5)
2008 (5)
2005 (3)
2004 (3)
2003 (1)
2001 (1)
2000 (1)

Lab affiliation

Medical Basic Research Innovation Center for Cardiovascular and Cerebrovascular Diseases, Ministry of Education, Nanjing Medical University, Nanjing, Jiangsu, China (3)
Shandong Normal University (3)
Memorial Sloan Kettering Cancer Center (3)
State Key Laboratory of Coordination Chemistry, School of Chemistry and Chemical Engineering, Chemistry and Biomedicine Innovation Center (ChemBIC), Nanjing University, Nanjing, China. (2)
Shanghai Tenth People's Hospital, Tongji University School of Medicine (2)
State Key Laboratory of Reproductive Medicine, Department of Histology and Embryology, Nanjing Medical University, Nanjing 211166, Jiangsu, China (2)
Tianjin Medical University General Hospital (2)
Department of Biochemistry and Molecular Biology, Capital Medical University, Beijing, 100069, China (2)
School of Life Sciences, Tsinghua University, China (2)
State Key Laboratory of Reproductive Medicine and Offspring Health， Nanjing Medical University, Nanjing, China. (2)
Institute of Biophysics, Chinese Academy of Sciences (2)
Shanghai Center for Systems Biomedicine Shanghai Jiao Tong University (2)
St. Jude Children's Research Hospital (2)
Beijing Institute of Genomics, Chinese Academy of Sciences (1)
Laboratory of Advanced Biotechnology, Beijing Institute of Biotechnology (1)
the First People's Hospital of Yinchuan (1)
Raymond H. Wittcoff Distinguished Professor and Head Department of Biochemistry and Molecular Biophysics Washington University School of Medicine St. Louis, MO 63110 United States of America (1)
The State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan, Hubei, China (1)
MOE Laboratory of Biosystem Homeostasis and Protection, College of Life Sciences, Zhejiang University; Hangzhou, Zhejiang, 310058, China (1)
Department of Biochemistry and Biophysics University of North Carolina Chapel Hill, NC USA (1)
State Key Laboratory of Marine Environmental Science / College of the Environment and Ecology, Xiamen University, China (1)
Instituto de Biología Vegetal y Fotosíntesis - Consejo Superior de Investigaciones Científicas and Universidad de Sevilla; Sevilla, Spain (1)
State Key Laboratory of Cellular Stress Biology, School of Life Sciences, Faculty of Medicine and Life Sciences, Xiamen University, Xiamen, Fujian, China. (1)
1Department of Hematology, Xiangya Hospital, Central South University, Changsha 410080, China 2NHC Key Laboratory of Carcinogenesis, Department of Microbiology, School of Basic Medical Science, Central South University, Changsha 410078, China (1)
1Department of Pathology, Dana-Farber/Harvard Cancer Center, PhD Program in Immunology, Harvard Medical School; Department of Laboratory Medicine, Boston Children's Hospital, Enders Research Building, Room 811, Boston, MA, 02115, USA (1)
Sun Yat-sen Memorial Hospital,Sun Yat-sen University 107 Yanjiang West Road Guangzhou 510120, P. R. China (1)
Doctor at Tongji Hospital, Huazhong University of Science and Technology, Wuhan, China (1)
State Key Laboratory of Medical Molecular Biology, Institute of Basic Medical Sciences Chinese Academy of Medical Sciences & School of Basic Medicine Peking Union Medical College, Beijing 100005, China (1)
State Key Laboratory of Medical Molecular Biology, Institute of Basic Medical Sciences Chinese Academy of Medical Sciences & School of Basic Medicine Peking Union Medical College, Beijing 100005, China (1)
Department of Cell Biology, School of Basic Medical Sciences, Southern Medical University, Guangzhou, Guangdong 510515, China (1)

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Lactobacillus plantarum Zhang-LL Inhibits Colitis-Related Tumorigenesis by Regulating Arachidonic Acid Metabolism and CD22-Mediated B-Cell Receptor Regulation.

Not available

S-EPMC10648432 | biostudies-literature

The subfamily Xerocomoideae (Boletaceae, Boletales) in China.

Not available

S-EPMC10825750 | biostudies-literature

Chinese herbal medicine Jia Wei Jing Xie Yin (JWJXY) ameliorates psoriasis via suppressing the Th17 cell response.

Not available

S-EPMC9011239 | biostudies-literature

Four new coelotine species (Araneae, Agelenidae, Coelotinae) from South China, with the first description of the male of Coelotes septus Wang, Yin, Peng & Xie, 1990.

Not available

S-EPMC8050011 | biostudies-literature

Cloning and Functional Characterization of Two Germacrene A Oxidases Isolated from Xanthium sibiricum.

Not available

S-EPMC9145264 | biostudies-literature

Plasma metabolome alteration in dairy cows with left displaced abomasum before and after surgical correction

Left displaced abomasum (LDA) leads to substantial changes in the metabolism of dairy cows. Surgical correction of LDA can rapidly improve the health of cows; however, changes in metabolism following surgery are rarely described. To investigate the changes of plasma metabolome in cows with LDA befor...

2022-08-17 | MTBLS4126 | MetaboLights

The ratio of dihomo-γ-linolenic acid to deoxycholic acid species is a potential biomarker for the metabolic abnormalities in obesity.

Not available

S-EPMC6191069 | biostudies-literature

Heterochromatin remodeling by CDK12 contributes to learning in Drosophila

We describe the epigenetic profiling of the H3K9me2 and HP1a in Drosophila third instar larvae before and after CDK12 depletion by RNA interference (RNAi). Here we show that CDK12 regulates heterochromatin dynamics in Drosophila chromosomes. Depletion of CDK12 induces the increased HP1a and H3K9me2 ...

ORGANISM(S): Drosophila melanogaster

2015-11-02 | E-GEOD-63011 | biostudies-arrayexpress

Octyl itaconate inhibits osteoclastogenesis by suppressing Hrd1 and activating Nrf2 signaling.

Not available

S-EPMC6902740 | biostudies-literature

A nanoluciferase SFTSV for rapid screening antivirals and real-time visualization of virus infection in mice.

Not available

S-EPMC10806088 | biostudies-literature