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TranscriptomicsArabidopsis AGO1 and AGO10 bound sRNAs
The shoot apical meristem (SAM) comprises a group of undifferentiated cells that divide to maintain the plant meristem and also give rise to all shoot organs. SAM fate is specified by class III HOMEODOMAIN-LEUCINE ZIPPER (HD-ZIP III) transcription factors, which are targets of miR166/165. In Arabido...
ORGANISM(S): Arabidopsis thaliana 
2012-08-03 | E-GEOD-39885 | biostudies-arrayexpress
GenomicsArabidopsis AGO3 predominantly recruits 24-nucleotide small RNAs to regulate epigenetic silencing [Bisulfite-seq]
AGO3 predominantly bound 24-nt sRNAs with 5’ terminal adenine. The spectrum of AGO3-associated sRNAs was different from those bound to AGO2. By contrast, approximately 30% of AGO3-bound 24-nt sRNAs overlapped with those bound to AGO4 and over 60% of AGO3-associated 24-nt sRNA enriched loci were id...
ORGANISM(S): Arabidopsis thaliana 
2016-05-31 | E-GEOD-78089 | biostudies-arrayexpress
TranscriptomicsArabidopsis AGO3 predominantly recruits 24-nucleotide small RNAs to regulate epigenetic silencing [miRNA-seq]
AGO3 predominantly bound 24-nt sRNAs with 5â?? terminal adenine. The spectrum of AGO3-associated sRNAs was different from those bound to AGO2. By contrast, approximately 30% of AGO3-bound 24-nt sRNAs overlapped with those bound to AGO4 and over 60% of AGO3-associated 24-nt sRNA enriched loci were id...
ORGANISM(S): Arabidopsis thaliana 
2016-05-31 | E-GEOD-78088 | biostudies-arrayexpress
TranscriptomicsCharacterization of AGO1-/AGO4-associated smRNAs
To fully characterize smRNAs associated with AGO1 and AGO4, we developed a two-step protocol to purify AGO/smRNA complexes from flowers, leaves, roots and seedlings with enhanced purity, and sequenced the smRNAs by IlluminaM-CM-"M-BM-^@M-BM-^Ys technology. We identified some additional miRNAs, colla...
ORGANISM(S): Arabidopsis thaliana 
2011-04-19 | E-GEOD-28591 | biostudies-arrayexpress
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