Zhao Chen C - OmicsDI

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Unknown (14455)
Proteomics (379)
Transcriptomics (168)
Metabolomics (63)
Genomics (57)
Multiomics (4)
Models (1)

Organisms

Homo sapiens (211)
Mus musculus (84)
Rattus norvegicus (9)
Arabidopsis thaliana (6)
Drosophila melanogaster (5)
Apostichopus japonicus (4)
Oryza sativa (4)
Urocitellus parryii (3)
Oryza sativa Indica Group (3)
Sus scrofa (3)
Zea mays (3)
Xenopus laevis (2)
Caenorhabditis elegans (2)
Spalax carmeli (1)
Nannospalax galili (1)
Cynoglossus semilaevis (1)
Pteropus alecto (1)
Deinococcus gobiensis (1)
Solanum pimpinellifolium (1)
Mustela putorius furo (1)
Capra hircus (1)
Cucumis sativus (1)
Bombyx mori (1)
Mus musculus musculus (1)
Bacillus subtilis subsp. subtilis str. 168 (1)
Macaca mulatta (1)
Pan troglodytes (1)
Drosophila simulans (1)
synthetic construct (1)
Apis mellifera (1)

Organisms

Homo sapiens (1)

Repository

pride (193)
biostudies-arrayexpress (190)
iProX (161)
MetaboLights (63)
EGA (33)
PeptideAtlas (14)
MassIVE (11)
BioModels (1)
geo (1)
ENA (1)

Tissue

Cell culture (49)
Leaf (12)
Plasma Non-glyco (11)
Plant cell (11)
Blood plasma (10)
Epithelial cell (10)
Liver (10)
Permanent cell line cell (9)
Blood serum (7)
Whole body (7)
Blood cell (6)
Testis (6)
Brain (5)
Root (5)
Colon (4)
Shoot (4)
Others (3)
Cell line cell (3)
Cell suspension culture (3)
Heart (3)
Pancreas (3)
Hepatocyte (2)
JURKAT cell (2)
Kidney (2)
Lung (2)
Macrophage (2)
Primary cell (2)
Seed (2)
Stem cell (2)
T cell (2)

Disease

Disease free (9)
Colon cancer (6)
Acute leukemia (3)
Breast cancer (3)
Cervix carcinoma (3)
Brain glioblastoma multiforme (2)
Hepatocellular carcinoma (2)
Liver carcinoma (2)
Lymphoma (2)
Normal (1)
Adenovirus infectious disease (1)
Capillary leak syndrome (1)
Chronic obstructive pulmonary disease (1)
Coronavirus infectious disease (1)
Gastric adenocarcinoma (1)
Lung cancer (1)
Male infertility (1)
Malignant neoplasm of ovary (1)
Mixed disorder as reaction to stress (1)
Non-small cell lung carcinoma (1)
Oligospermia (1)
Plasmodium falciparum malaria (1)
Renal cell carcinoma (1)
Type 2 diabetes mellitus (1)

Technology Type

Mass Spectrometry (193)
Shotgun proteomics (110)
Mass spectrometry (52)
Bottom-up proteomics (30)
Gel-based experiment (22)
Data-dependent acquisition (15)
Top-down proteomics (15)
Affinity purification coupled with mass spectrometry proteomics (11)
Mass spectrometry assay (9)
Data-independent acquisition (6)
Illumina HiSeq 2000 (3)
Chemical cross-linking coupled with mass spectrometry proteomics (3)
SRM/MRM (3)
SWATH MS (3)
NMR spectroscopy (2)
Proteogenomics (2)
Illumina HiSeq 2500, ILLUMINA (1)
DiaPASEF (1)
MSE (1)
Mass spectrometry imaging (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (25)
Liquid Chromatography MS - positive - reverse phase (23)
LTQ Orbitrap Velos (14)
Illumina HiSeq 2000 (8)
Liquid Chromatography MS - negative - hilic (7)
Liquid Chromatography MS - positive - hilic (7)
Illumina HiSeq 2500 (4)
Gas Chromatography MS - (4)
Orbitrap Fusion Lumos (3)
LTQ Orbitrap Elite (3)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (3)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (3)
Gas Chromatography MS - positive (3)
Liquid Chromatography MS - alternating - reverse-phase (3)
Liquid Chromatography MS - alternating - hilic (3)
Illumina NovaSeq 6000 (2)
Orbitrap Eclipse (2)
Orbitrap Exploris 480 (2)
Q Exactive HF (2)
TOF Pegasus HT (LECO) (2)
Xevo G2 QTOF (Waters) (2)
Liquid Chromatography MS - (2)
Liquid Chromatography MS - negative (2)
Liquid Chromatography MS - alternating - reverse phase (2)
Illumina HiSeq 2000 platform (1)
Illumina HiSeq X (1)
Q Exactive HF-X (1)
Xevo TQ MS (Waters) (1)
Liquid Chromatography MS - alternating – hilic (1)
Capillary electrophoresis MS - negative (1)

Publication Date

2022 (83)
2025 (56)
2021 (50)
2014 (45)
2023 (43)
2024 (34)
2015 (34)
2013 (34)
2020 (27)
2016 (24)
2012 (23)
2019 (22)
2026 (20)
2010 (17)
2018 (15)
2017 (14)
2009 (8)
2008 (8)
2011 (7)
2005 (5)
2007 (1)
2004 (1)

UNIPROT ID/AC

A0A024RC46 (14)
A5A3E0 (14)
A6NNZ2 (14)
B3KML9 (14)
B4DHB3 (14)
B4DL86 (14)
B4DRV9 (14)
B4DY08 (14)
B4E3A4 (14)
C9JM50 (14)
E7EX29 (14)
G8JLB6 (14)
H0YM50 (14)
H7BZ94 (14)
I3L4N8 (14)
J3KPS3 (14)
J3QRK5 (14)
M0QZ52 (14)
O00299 (14)
O14556 (14)
O14818 (14)
O60812 (14)
O75369 (14)
O75369-8 (14)
O75694 (14)
O76013 (14)
O76015 (14)
O95678 (14)
P00338 (14)
P00338-3 (14)

ENSEMBL ID

ENSG00000170477 (14)
ENSG00000147251 (7)
ENSG00000247315 (3)

CHEBI ID

CHEBI:17368 (16)
CHEBI:30769 (16)
CHEBI:16704 (15)
CHEBI:17351 (15)
CHEBI:16335 (14)
CHEBI:16359 (14)
CHEBI:15756 (14)
CHEBI:17568 (13)
CHEBI:7916 (13)
CHEBI:18050 (13)
CHEBI:17895 (13)
CHEBI:17596 (13)
CHEBI:28865 (13)
CHEBI:17687 (13)
CHEBI:16708 (12)
CHEBI:16750 (12)
CHEBI:28875 (12)
CHEBI:16196 (12)
CHEBI:15891 (12)
CHEBI:28834 (12)
CHEBI:15354 (12)
CHEBI:16828 (12)
CHEBI:28842 (11)
CHEBI:35581 (11)
CHEBI:17750 (11)
CHEBI:48131 (11)
CHEBI:16737 (11)
CHEBI:28716 (11)
CHEBI:18089 (11)
CHEBI:30805 (10)

Metabolite Name

Uridine (16)
Inosine (16)
Guanosine (15)
Hypoxanthine (15)
Uracil (13)
Adenosine (13)
Adenine (13)
Palmitic acid (12)
Xanthine (12)
L-Tyrosine (12)
Xanthosine (11)
L-Glutamine (11)
Azelaic acid (11)
L-Arginine (10)
Guanine (10)
Cytidine (10)
L-Phenylalanine (10)
Betaine (9)
Succinic acid (9)
L-Histidine (9)
Taurine (9)
Citric acid (9)
Cytosine (9)
L-Tryptophan (9)
Creatinine (9)
Creatine (9)
Pantothenic acid (8)
L-Glutamic acid (8)
Choline (8)
Deoxycholic acid (8)

First Public Date

2014 (1)

Modelling Approach

Ordinary differential equation model (1)

Lab affiliation

Univeristy of Georgia (5)
Alkali Soil Natural Environmental Science Center, Northeast Forestry University, Key Laboratory of Saline-alkali Vegetation Ecology Restoration in Oil Field, Ministry of Education, Harbin 150040, China (4)
Laboratory of Microbiology Oceanography, State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, State Key Laboratory of Ocean Engineering, Shanghai Jiao Tong University, School of Oceanography, Shanghai JiaoTong University (4)
Agronomy College, Henan Agricultural University, China (3)
Agronomy College/National Key Laboratory of Wheat and Corn Crop/Collaborative Innovation Center of Henan Grain Crops, Henan Agricultural University ,Zhengzhou China (2)
Alkali Soil Natural Environmental Science Center, Northeast Forestry University, Harbin 150040, China (2)
Cancer Center and Research Institute of Intestinal Diseases, Shanghai Tenth People's Hospital, School of Medicine, Tongji University (2)
Department of Hematology, Tongji Hospital, Frontier Science Center for Stem Cell Research, Shanghai Key Laboratory of Signaling and Disease Research, School of Life Sciences and Technology, Tongji University, Shanghai, 200092, China (2)
Molecular Biology and the Lewis-Sigler Institute for Integrative Genomics, Princeton University, USA (2)
Nanjing Medical University (2)
Peking University (2)
Soochow University (2)
State Key Laboratory of Oncology in South China (2)
State Key Laboratory of Reproductive Medicine and Offspring Health, Department of Histology and Embryology, Gusu School, Nanjing Medical University (2)
Affiliated Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology (1)
Affiliation of Zhengting Chen, Jing Wang, Hebo Zhao, Yaping Yue, Biao Liu, Yu Zhao, Dao-Xiu Zhou: National Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University, 430070 Wuhan, China (1)
Artemisinin Research Center, Institute of Chinese Materia Medica, China Academy ofChinese Medical Sciences (1)
Associate Professor of Chemistry, University of California, Riverside (1)
BGI-Shenzhen (1)
Beijing Chaoyang Hospital, Capital Medical University (1)
Biological Science Research Center, Southwest University, Chongqing, 400715, China (1)
Breast Tumor Center Sun Yat-Sen Memorial Hospital Sun Yat-Sen University 107 Yanjiang West Road Guangzhou 510120, P.R.China (1)
CAS Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai 200032, China (1)
CAS Key Laboratory for Biomedical Effects of Nanomaterials and Nanosafety, CAS-HKU Joint Laboratory of Metallomics on Health and Environment & CAS Center for Excellence in Nanoscience, Institute of High Energy Physics & National Center for Nanoscience and Technology of China, Chinese Academy of Sciences, Beijing 100049, P. R. China (1)
CAS Key Laboratory for Biomedical Effects of Nanomaterials and Nanosafety, Institute of High Energy Physics and National Center for Nanoscience and Technology of China, Chinese Academy of Sciences, Beijing 100049, P. R. China (1)
Capital Normal University (1)
Center for Tuberculosis Control of Guangdong Province, Guangzhou, 510630, China (1)
Center of Reproductive Medicine, Nanjing Jinling Hospital, Clinical School of Medical College, Nanjing University, China. (1)
Central Laboratory, Wuxi Maternity and Child Health Care Hospital Affiliated to Nanjing Medical University (1)
Chair of Proteomics and Bioanalytics, Technical University of Munich, Bavaria, Germany (1)

IsPrivate

False (1)

Modification

15.994915 (1)
2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)
57.021464 (1)

Study type

Transcription profiling by array (86)
RNA-seq of coding RNA (49)
ChIP-seq (15)
RNA-seq of non coding RNA (13)
Methylation profiling by high throughput sequencing (7)
Other (6)
Comparative genomic hybridization by array (4)
MicroRNA profiling by array (3)
Unknown experiment type (2)
Methylation profiling by array (2)
ChIP-chip by tiling array (1)
Transcription profiling by RT-PCR (1)
DNA-seq (1)

Release Date

2025 (2289)
2022 (2046)
2023 (1839)
2024 (1745)
2021 (1579)
2020 (1160)
2019 (791)
2018 (680)
2017 (518)
2016 (461)
2015 (342)
2026 (297)
2014 (291)
2013 (197)
2012 (123)
2010 (75)
2011 (61)
2009 (59)
2008 (43)
2007 (13)
2005 (11)
2006 (10)
2004 (7)
2000 (4)
2003 (1)
2002 (1)
1998 (1)

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Exogenous L-Alanine promotes phagocytosis multidrug-resistant bacterial pathogens (V. parahaemolyticus-infected spleen metabolomics)

Multidrug-resistant bacteria present a major threat to public health. Therefore, new drugs or approaches are urgently needed to manage and mitigate this threat. Here, we screen the molecular candidates that allow the survival of mice upon Vibrio parahaemolyticus infection by integrated p...

2024-09-26 | MTBLS7996 | MetaboLights

Bingzheng1990_GlucocorticoidsSecretion

This a model from the article: A mathematical model of the regulation system of the secretion of glucocorticoids Liu Bingzheng, Zhao Zhenye and Chen Liansong Journal of Biological Physics 1990 17(4):221-233 doi:10.1007/BF00386598 , ...

2005-01-01 | MODEL1172200168 | BioModels

Preparation and characterization of immobilized 5-HT_1A receptor stationary phase for high throughput screening of the receptor-binding ligands from complex systems like Curcuma wenyujin Y. H. Chen et C. Ling extract.

Not available

S-EPMC8806404 | biostudies-literature

Two novel VPS33B mutations in a patient with arthrogryposis, renal dysfunction and cholestasis syndrome in mainland China.

Not available

S-EPMC3886028 | biostudies-literature

Data on the characterization of native soy globulin by SDS-Page, light scattering and titration.

Not available

S-EPMC5096597 | biostudies-literature

Changes in expression of small non-coding RNAs/microRNAs during aging in C. elegans

We report a significant number of miRNAs and other non-coding small RNAs show dramatic changes in expression during aging in C. elegans. RNAs were prepared from four diffrent timepoints during adulthood of C. elegans hermaphrodites, Day 0, 5, 8 and 12 post-L4 molt, and used for making cDNA libraries...

ORGANISM(S): Caenorhabditis elegans

2009-12-31 | E-GEOD-18634 | biostudies-arrayexpress

Association of IL-17 polymorphisms with gastric cancer risk in Asian populations.

Not available

S-EPMC4427697 | biostudies-literature

Lithium-response pathway in hiPSCs implicates the phosphoregulatory set-point for a cytoskeletal

Tobe BTD, Crain AM, Winquist AM, Calabrese B, Makihara H, Zhao W, Lalonde J, Nakamura H, Konopaske G, Sidor M, Pernia C, Yamashita N, Wada M, Inoue Y, Nakamura F, Sheridan SD, Logan R, Brandel M, Wu D, Hunsberger J, Dorsett L, Duerr C, Basa RCB, McCarthy MJ, Udeshi N, Mertins P, Carr SA, Rouleau G, ...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2017-04-21 | MSV000080975 | MassIVE

ZIPK mediates endothelial cell contraction through myosin light chain phosphorylation and is required for ischemic-reperfusion injury.

Not available

S-EPMC6662964 | biostudies-literature

Transcription profiling of C. elegans Twist heat shock

Three biological replicates of each treatment were generated and the expression profiles were determined using Affymetrix C. elegans arrays. Comparisons between the sample groups allow the identification of genes expression patterns. Experiment Overall Design: Two genotype of C. elegans with 3 biol...

ORGANISM(S): Caenorhabditis elegans

2008-06-12 | E-GEOD-2862 | biostudies-arrayexpress

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