Zhao He H - OmicsDI

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Unknown (6071)
Proteomics (158)
Transcriptomics (41)
Genomics (41)
Metabolomics (21)
Multiomics (4)
Models (2)
Other (1)

Organisms

Homo sapiens (134)
Mus musculus (44)
Rattus norvegicus (10)
Escherichia coli (9)
Oryza sativa (4)
Staphylococcus aureus (4)
Arabidopsis thaliana (3)
Medicago truncatula (3)
Sus scrofa domesticus (3)
Macaca fascicularis fascicularis (2)
Mycobacterium tuberculosis H37Rv_2009 (2)
Aspergillus flavus (1)
Aspergillus oryzae (1)
Shigella flexneri (1)
Bombyx mori (1)
Zea mays (1)
Caenorhabditis elegans (1)
Triticum aestivum (1)
Canis lupus (1)
Chlorocebus sabaeus (1)
Klebsiella pneumoniae subsp. pneumoniae HS11286 (1)
Ligilactobacillus salivarius (1)
Papilio xuthus (1)
Rattus rattus (1)
Severe acute respiratory syndrome coronavirus 2 (1)
Ulva prolifera (1)
African swine fever virus (1)
Bos taurus (1)
Brucella abortus (1)
Brucella abortus 2308 (1)

Repository

pride (93)
iProX (60)
biostudies-arrayexpress (56)
EGA (24)
MetaboLights (21)
MassIVE (3)
PeptideAtlas (3)
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ENA (2)

Tissue

Cell culture (27)
Liver (7)
Epithelial cell (5)
Blood serum (4)
Permanent cell line cell (4)
Others (3)
Blood plasma (3)
Hepatocyte (3)
Brain (2)
Colon (2)
Kidney (2)
Leaf (2)
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Testis (2)
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Antler (1)
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Cell suspension culture (1)
Diploid cell (1)
Esophagus (1)
Fungal cell (1)
HEK-293T cell (1)
HeLa cell (1)
Heart (1)
Ileum (1)
MC-38 cell (1)
Oocyte (1)

Disease

Colon cancer (4)
Breast cancer (3)
Disease free (3)
Cardiovascular system disease (2)
Hepatocellular carcinoma (2)
Influenza (2)
Prostate adenocarcinoma (2)
Acute leukemia (1)
Cervix carcinoma (1)
Cognitive disorder (1)
Primary ovarian insufficiency (1)

Technology Type

Mass Spectrometry (93)
Shotgun proteomics (49)
Bottom-up proteomics (17)
Mass spectrometry (13)
Data-independent acquisition (10)
Data-dependent acquisition (8)
Gel-based experiment (8)
Mass spectrometry assay (7)
Affinity purification coupled with mass spectrometry proteomics (6)
Chemical cross-linking coupled with mass spectrometry proteomics (3)
SWATH MS (3)
Top-down proteomics (3)
Illumina HiSeq 2000, ILLUMINA (2)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000 (1)
NMR spectroscopy (1)
DiaPASEF (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (11)
Liquid Chromatography MS - positive - reverse phase (8)
Liquid Chromatography MS - positive - hilic (6)
Illumina HiSeq 2000 (3)
Liquid Chromatography MS - negative - hilic (3)
Illumina HiSeq 2500 (2)
Gas Chromatography MS - positive (2)
Liquid Chromatography MS - - reverse phase (2)
LTQ Orbitrap Elite (2)
Illumina NovaSeq 6000 (1)
Bruker maXis ESI Quadrupole TOF (1)
LTQ Orbitrap Velos Pro (1)
Q Exactive (1)
Bruker (1)
Direct infusion MS - (1)
Gas Chromatography MS - (1)
Gas Chromatography MS - - - Liquid Chromatography MS - - - Gas Chromatography MS - positive (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - alternating - reverse-phase (1)
Liquid Chromatography MS - negative (1)
Liquid Chromatography MS - negative - reverse-phase (1)
Liquid Chromatography MS - positive - reverse-phase (1)
Liquid Chromatography Tandem MS (LC-MS/MS) (1)
QExactive (1)
Applied biosystems / mds sciex 4700 proteomics analyzer (1)
Applied biosystems / mds sciex q trap (1)
Applied biosystems / mds sciex qstar (1)
Thermo lcq deca (1)
Thermo lcq deca xp (1)
Thermo ltq (1)

Publication Date

2021 (33)
2025 (28)
2022 (26)
2024 (22)
2023 (21)
2026 (19)
2013 (18)
2014 (14)
2016 (12)
2019 (12)
2018 (6)
2015 (5)
2012 (5)
2017 (4)
2020 (3)
2010 (3)
2005 (2)
2011 (2)
2009 (1)
2008 (1)
2007 (1)

UNIPROT ID/AC

A0A024R563 (3)
A0A024R8H9 (3)
A0A024RAN2 (3)
A0A024RC46 (3)
A0A087WUD1 (3)
A0A087WVZ5 (3)
A0A087WWK8 (3)
A0A087WXI0 (3)
A0A087WZE9 (3)
A0A087X1S3 (3)
A0A0A0MR66 (3)
A0A0A0MS51 (3)
A0A0A0MSA7 (3)
A0A0B4J220 (3)
A0A0C4DG89 (3)
A0A0C4DGT3 (3)
A0AV96 (3)
A0AVT1 (3)
A0FGR8 (3)
A0FGR8-2 (3)
A0FGR8-6 (3)
A0JLT2 (3)
A0JNW5 (3)
A0MZ66 (3)
A0PJW6 (3)
A0PK00 (3)
A1A4S6 (3)
A1L0T0 (3)
A1L170 (3)
A1L390 (3)

ENSEMBL ID

ENSG00000147251 (3)
ENSG00000170477 (3)
ENSG00000247315 (3)

CHEBI ID

CHEBI:15354 (6)
CHEBI:15971 (6)
CHEBI:17203 (6)
CHEBI:30769 (6)
CHEBI:15428 (5)
CHEBI:16027 (5)
CHEBI:16040 (5)
CHEBI:16414 (5)
CHEBI:16958 (5)
CHEBI:17154 (5)
CHEBI:17191 (5)
CHEBI:17351 (5)
CHEBI:17368 (5)
CHEBI:17750 (5)
CHEBI:17895 (5)
CHEBI:33508 (5)
CHEBI:7916 (5)
CHEBI:15741 (4)
CHEBI:15891 (4)
CHEBI:16015 (4)
CHEBI:16196 (4)
CHEBI:16235 (4)
CHEBI:16467 (4)
CHEBI:16610 (4)
CHEBI:16643 (4)
CHEBI:16708 (4)
CHEBI:16737 (4)
CHEBI:17053 (4)
CHEBI:17151 (4)
CHEBI:17361 (4)

Metabolite Name

Adenine (4)
Arachidonic acid (4)
Citric acid (4)
DL-Dopa (4)
Hypoxanthine (4)
Pyrrole-2-carboxylic acid (4)
16-Hydroxy hexadecanoic acid (3)
Benzoic acid (3)
Cortisone (3)
Creatinine (3)
Cytosine (3)
Deoxycholic acid (3)
Deoxyinosine (3)
Docosahexaenoic acid (3)
Glyceraldehyde (3)
Glyceric acid (3)
Guanine (3)
L-histidine (3)
L-lysine (3)
L-methionine (3)
L-proline (3)
Maleic acid (3)
Malic acid (3)
Myristic acid (3)
Spermidine (3)
Thymidine (3)
Uracil (3)
2,2-Dimethylsuccinic acid (2)
2-Hydroxyethanesulfonate (2)
2-Oxovaleric acid (2)

IsPrivate

False (2)

First Public Date

2023 (2)

Modelling Approach

Ordinary differential equation model (2)

Modification

2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)
Not available (1)

Study type

RNA-seq of coding RNA (20)
Transcription profiling by array (15)
ChIP-seq (10)
Methylation profiling by high throughput sequencing (5)
Other (2)
ChIP-chip by tiling array (1)
Transcription profiling by RT-PCR (1)
Comparative genomic hybridization by array (1)
RNA-seq of non coding RNA (1)

Release Date

2025 (1036)
2022 (816)
2024 (808)
2023 (762)
2021 (650)
2020 (460)
2018 (279)
2019 (266)
2017 (221)
2016 (184)
2026 (153)
2015 (143)
2014 (109)
2013 (84)
2012 (42)
2010 (33)
2011 (31)
2009 (20)
2008 (8)
2006 (6)
2007 (4)
2005 (4)
2004 (3)
2002 (3)
2003 (1)
2001 (1)

Lab affiliation

Chinese Academy of Sciences Shanghai Institute of Materia Medica (3)
State Key Laboratory of Proteomics, National Center for Protein Sciences Beijing, Beijing Proteome Research Center, Beijing Institute of Radiation Medicine, Beijing 102206, China (3)
The University of Chicago (3)
Department of Laboratory Medicine, Ren Ji Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai, China. (2)
Ping Xu, Ph.D. Secretary General of CNHUPO Professor, Director Department of Genomics and Proteomics, State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing) Beijing Institute of Lifeomics， 38 Life Science Park Road, Beijing 102206, P.R. China. Tel: 0086-10-61777113, Fax: 0086-10-61777060 (2)
Sichuan Provincial People's Hospital (2)
State Key Laboratory of Medical Molecular Biology, Department of Biochemistry and Molecular Biology, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences, School of Basic Medicine Peking Union Medical College, Beijing 100005, China (2)
State Key Laboratory of Medical Molecular Biology, Department of Biochemistry and Molecular Biology, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences, School of Basic Medicine Peking Union Medical College, Beijing 100005, China. (2)
The Fifth Affiliated Hospital of Guangzhou Medical University (2)
1. Precision Medicine Research Programme, Yong Loo Lin School of Medicine, National University of Singapore, Singapore. 2. Cardiovascular Disease Research Programme, Yong Loo Lin School of Medicine, National University of Singapore, Singapore. 3. Department of Biochemistry, Yong Loo Lin School of Medicine, National University of Singapore, Singapore. (1)
1Department of Urology, Emory University School of Medicine, Atlanta, GA, USA (1)
Anhui Medical University (1)
Ben May Department for Cancer Research, The University of Chicago (1)
Ben May Department for Cancer Research, The University of Chicago, Chicago, IL 60637, USA (1)
Ben May department of cancer research, The university of Chicago (1)
CAS Key Laboratory of Separation Science for Analytical Chemistry, National Chromatographic R & A Center, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, China. (1)
Center for Cell Lineage and Development, CAS Key Laboratory of Regenerative Biology, Guangdong Provincial Key Laboratory of Stem Cell and Regenerative Medicine, GIBH-HKU Guangdong-Hong Kong Stem Cell and Regenerative Medicine Research Centre, Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences, Guangzhou, China. (1)
Central Laboratory, Wuxi Maternity and Child Health Care Hospital Affiliated to Nanjing Medical University (1)
China-Japan Friendship Hospital, Beijing, China (1)
China-Japan Friendship Hospital, China (1)
College of Food Science & Technology, Nanjing Agricultural University, Weigang 1#, Nanjing, 210095, P.R. China (1)
College of Life Sciences, Wuhan Univeristyege of Life Sciences, Wuhan Univeristylege of Life Sciences, Wuhan Univeristy (1)
College of Veterinary Medicine, Huazhong Agricultural University, Wuhan 430070, China (1)
Department of Anesthesiology and Perioperative Medicine, Xijing Hospital,the Fourth Military Medical University, Xi'an 710032, China (1)
Department of Breast Surgery, The First Affiliated Hospital of Xi'an Jiaotong University, 277 West Yanta Road, 710061 Xi’an, People’s Republic of China. (1)
Department of Cancer Biology, Dana-Farber Cancer Institute Department of Cell Biology, Harvard Medical School (1)
Department of Pathophysiology, School of Basic Medical Sciences, Zhengzhou University, Zhengzhou, Henan, China (1)
Department of Pharmacology and Physiology, University of Rochester Medical Center, Rochester, NY 14642, USA (1)
Department of Urology, Emory University School of Medicine, Atlanta, GA, USA (1)
Division of Digestive Diseases, Department of Medicine, Emory University School of Medicine, Atlanta, GA 30322, USA (1)

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Theoretical evidence of H-He demixing under Jupiter and Saturn conditions.

Not available

S-EPMC11447227 | biostudies-literature

Factors of the HIV Transmission in Men Who Have Sex with Men in Suizhou City from 2009 to 2013.

Not available

S-EPMC4380911 | biostudies-literature

Improved SILAC Method for Double Labeling of Bacterial Proteome

Stable isotope labeling with amino acids in cell culture (SILAC) is a robust proteomics method with the advantages of reproducibility and easy handling. This method is popular for the analysis of mammalian cells. However, amino acid conversion in bacteria decreases the labeling efficiency and quanti...

ORGANISM(S): Escherichia coli Staphylococcus aureus

2022-02-28 | PXD011244 | Pride

Chevrette et al 2019 Insect-associated Streptomyces

Paper title: The antimicrobial potential of Streptomyces from insect microbiomes. Author list: Chevrette MG, Carlson CM, Ortega HE, Thomas C, Ananiev GE, Barns KJ, Book AJ, Cagnazzo J, Carlos C, Flanigan W, Grubbs KJ, Horn HA, Hoffmann FM, Klassen JL, Knack JJ, Lewin GR, McDonald BR, Muller L, Melo ...

ORGANISM(S): Pseudonocardia Kitasatospora Streptomyces Gordonia <actinomycete>

2019-12-18 | MSV000084723 | MassIVE

HE Breathing: a new ventilation mode in airway surgery.

Not available

S-EPMC11740049 | biostudies-literature

Transcriptomic and Metabolomics Profiling of Phage–Host Interactions between Phage PaP1 and Pseudomonas aeruginosa

The basic biology of bacteriophage–host interactions has attracted increasing attention due to a renewed interest in the therapeutic potential of bacteriophages. In addition, knowledge of the host pathways inhibited by phage may provide clues to novel drug targets. However, the effect of phage on ba...

2018-05-03 | MTBLS431 | MetaboLights

New corticioid taxa in Phanerochaetaceae (Polyporales, Basidiomycota) from East Asia.

Not available

S-EPMC10034411 | biostudies-literature

A photo-oxidation driven proximity labeling strategy enables profiling of mitochondrial proteome dynamics in living cells

We herein report a photo-oxidation driven proximity labeling strategy to profile mitochondrial proteome by light dependence in living cells with high spatiotemporal resolution. Taking advantage of organelle-localizable organic photoactivated probe generating reactive species and nucleophilic substra...

ORGANISM(S): Homo sapiens (Human)

2023-03-11 | PXD036630 | Pride

Photo-oxidation Proximity labeling Mitochondrial proteome

On the use of fluorescence lifetime imaging and dihydroethidium to detect superoxide in intact animals and ex vivo tissues: a reassessment.

Not available

S-EPMC4275029 | biostudies-literature

Bingzheng1990_GlucocorticoidsSecretion

This a model from the article: A mathematical model of the regulation system of the secretion of glucocorticoids Liu Bingzheng, Zhao Zhenye and Chen Liansong Journal of Biological Physics 1990 17(4):221-233 doi:10.1007/BF00386598 , ...

2005-01-01 | MODEL1172200168 | BioModels

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