Zhao K K - OmicsDI

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Unknown (21970)
Proteomics (524)
Transcriptomics (351)
Genomics (179)
Metabolomics (87)
Multiomics (4)
Models (1)

Organisms

Homo sapiens (340)
Mus musculus (173)
Arabidopsis thaliana (16)
Rattus norvegicus (14)
Drosophila melanogaster (9)
Saccharomyces cerevisiae (8)
Zea mays (5)
Caenorhabditis elegans (5)
Sus scrofa (5)
Oryza sativa (5)
Danio rerio (3)
Oryza sativa Japonica Group (3)
Apostichopus japonicus (2)
Camponotus floridanus (2)
Cunninghamia lanceolata (2)
Bombyx mori (2)
Pan troglodytes (2)
Xenopus laevis (2)
Medicago truncatula (2)
Salmonella enterica subsp. enterica serovar Typhimurium (2)
Glycine max (2)
Triticum aestivum (2)
Gallus gallus (2)
Solanum chilense (1)
Spalax carmeli (1)
Pseudomonas phage PaP1 (1)
Nannospalax galili (1)
Sorghum propinquum (1)
Cynoglossus semilaevis (1)
Pteropus alecto (1)

Organisms

Escherichia coli K-12 (1)
Medicago truncatula (1)
Homo sapiens (1)

Repository

biostudies-arrayexpress (442)
pride (352)
iProX (129)
MetaboLights (83)
EGA (80)
MassIVE (20)
jPOST (18)
ENA (8)
GNPS (4)
PeptideAtlas (3)
PanoramaPublic (2)
BioModels (1)

Tissue

Cell culture (83)
Epithelial cell (38)
Brain (20)
Leaf (12)
Liver (12)
Permanent cell line cell (10)
Plant cell (10)
Blood serum (8)
Lung (8)
Kidney (7)
Whole body (7)
Abdominal adipose tissue (5)
Root (5)
B cell (5)
Heart (5)
Pupal wing (4)
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Blood (4)
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Blood cell (4)
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Pancreas (4)
Testis (4)
Blood plasma (4)
Others (3)
Malignant cell (3)
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Fibroblast (3)
Ovary (3)

Disease

Breast cancer (10)
Disease free (8)
Colon cancer (5)
Prostate adenocarcinoma (4)
Lung cancer (4)
Cervical cancer (3)
Cervix carcinoma (3)
Acute leukemia (3)
Wounds and Injuries (3)
Temporal lobe epilepsy (2)
Ovarian carcinoma (2)
Melanoma (2)
Renal cell carcinoma (2)
Lymphoma (2)
Liver carcinoma (2)
Osteoblastoma (2)
Glioblastoma (2)
Chronic granulomatous disease (1)
Normal (1)
Prostate neuroendocrine neoplasm (1)
Adult hepatocellular carcinoma (1)
Capillary leak syndrome (1)
Peripheral primitive neuroectodermal tumor (1)
Cataract (1)
Triple-receptor negative breast cancer (1)
Retinal disease (1)
Psoriasis (1)
Cerebrovascular disease (1)
Oligospermia (1)
Zika fever (1)

Technology Type

Mass Spectrometry (352)
Shotgun proteomics (150)
Mass spectrometry (66)
Bottom-up proteomics (56)
Affinity purification coupled with mass spectrometry proteomics (47)
Data-dependent acquisition (37)
Gel-based experiment (26)
Data-independent acquisition (22)
Top-down proteomics (20)
SWATH MS (16)
Chemical cross-linking coupled with mass spectrometry proteomics (12)
Mass spectrometry assay (11)
NMR spectroscopy (6)
Proteogenomics (4)
DiaPASEF (3)
Illumina HiSeq 2000 (2)
Illumina HiSeq 2000, ILLUMINA (2)
Illumina Genome Analyzer II (2)
Mass spectrometry imaging (2)
SRM/MRM (2)
Illumina HiSeq 2500, ILLUMINA (1)
Illumina HiSeq 2000, Illumina MiSeq (1)
Illumina Genome Analyzer, Illumina HiSeq 2000, Illumina MiSeq, Affymetrix_U133plus2- (1)
ABI_SOLID, Illumina Genome Analyzer IIx, Affymetrix_GenomeWide_SNP6.34 (1)
AB SOLiD 4 System, Illumina HiSeq 2500, Illumina HiSeq 2000, AB SOLiD System 3.0 (1)
Illumina HiSeq 2500, Illumina HiSeq 2000 (1)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Immunopeptidomics (1)
All-ion fragmentation (1)
HDMSE (1)

Instrument Platform

Illumina HiSeq 2000 (8)
Illumina HiSeq 2500 (6)
Q Exactive (6)
NextSeq 500 (4)
LTQ FT (3)
Orbitrap Fusion Lumos (3)
LTQ Orbitrap Elite (3)
Conviron controlled environment chamber (2)
Illumina NovaSeq 6000 (2)
Q Exactive Plus (2)
Orbitrap Exploris 480 (2)
Illumina HiSeq 2000 platform (1)
Illumina iScan (1)
ScanArray 4000 [PerkinElmer] (1)
Scanning hardware (1)
Illumina HiSeq 1000 (1)
BGISEQ-500 (1)
HiSeq X Ten (1)
Illumina MiSeq (1)
Illumina HiSeq 4000 (1)
TSQ Quantum Ultra (1)
MicrOTOF II (1)
ZenoTOF 7600 (1)
LTQ Orbitrap XL (1)
LTQ (1)
LTQ Orbitrap Velos Pro (1)
LTQ Orbitrap Velos (1)
TripleTOF 5600 (1)
Orbitrap Fusion (1)
Orbitrap Exploris 240 (1)

Publication Date

2025 (103)
2022 (96)
2013 (71)
2021 (67)
2015 (63)
2023 (61)
2014 (60)
2026 (57)
2024 (56)
2010 (53)
2012 (52)
2011 (50)
2020 (45)
2016 (37)
2019 (28)
2018 (25)
2017 (22)
2008 (21)
2009 (19)
2007 (7)
2006 (4)
2005 (2)
2004 (1)

UNIPROT ID/AC

Q6ZVE7 (3)
Q99619 (3)
Q8N4U5 (3)
Q9UBZ4 (3)
Q96QP1 (3)
Q9H633 (3)
Q96PC5-2 (3)
Q96PC5 (3)
Q8TDW5 (3)
Q6ZTQ3 (3)
Q9NXZ2 (3)
Q8IZP6 (3)
Q9Y576 (3)
Q9C019 (3)
Q96EP1 (3)
Q8IYM2 (3)
Q02833 (3)
Q86SJ2 (3)
Q6MZQ0 (3)
O43194 (3)
Q9UHA2 (3)
Q8NC06 (3)
Q9Y2C3 (3)
O00338 (3)
Q6NSJ2 (3)
Q17R98 (3)
Q9BZD2 (3)
Q96K80 (3)
Q8WUA8 (3)
Q3MII6 (3)

ENSEMBL ID

ENSG00000247315 (3)
ENSG00000147251 (3)
ENSG00000170477 (3)

CHEBI ID

CHEBI:30769 (23)
CHEBI:16704 (23)
CHEBI:17596 (23)
CHEBI:16919 (22)
CHEBI:15891 (22)
CHEBI:15756 (21)
CHEBI:18237 (20)
CHEBI:15354 (20)
CHEBI:17568 (20)
CHEBI:17368 (20)
CHEBI:17351 (19)
CHEBI:28044 (19)
CHEBI:16335 (19)
CHEBI:16196 (18)
CHEBI:15741 (18)
CHEBI:27897 (18)
CHEBI:16737 (17)
CHEBI:16708 (17)
CHEBI:15428 (17)
CHEBI:17750 (17)
CHEBI:25094 (17)
CHEBI:28300 (17)
CHEBI:7916 (17)
CHEBI:16811 (17)
CHEBI:28865 (16)
CHEBI:17154 (16)
CHEBI:15318 (16)
CHEBI:17895 (16)
CHEBI:26271 (16)
CHEBI:18132 (16)

Metabolite Name

Guanosine (16)
Uridine (16)
Creatine (15)
Adenine (15)
Hypoxanthine (14)
Uracil (14)
Adenosine (14)
Taurine (14)
Xanthine (14)
Inosine (14)
L-Tyrosine (13)
Cytidine (13)
Creatinine (11)
Palmitic acid (11)
Isoleucine (11)
Glycerophosphocholine (10)
Guanine (10)
Choline (10)
Betaine (10)
Linoleic acid (10)
Uric acid (10)
Thymidine (10)
L-Arginine (9)
L-Proline (9)
L-Glutamine (9)
Cytosine (9)
Glutamine (9)
Oleic acid (9)
5-Hydroxy-L-tryptophan (8)
Niacinamide (8)

First Public Date

2016 (2)
2026 (1)
2025 (1)
2022 (1)
2021 (1)
2020 (1)
2018 (1)

Modelling Approach

Constraint-based model (1)

Lab affiliation

Univeristy of Georgia (5)
Guangzhou Medical University (4)
Institute for Research in Immunology and Cancer, Department of Biochemistry, Department of Chemistry, Université de Montréal, Québec, Canada H3T 1J4 (4)
Chinese Academy of Sciences Shanghai Institute of Materia Medica (4)
Laboratory of Microbiology Oceanography, State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, State Key Laboratory of Ocean Engineering, Shanghai Jiao Tong University, School of Oceanography, Shanghai JiaoTong University (4)
Department of Orthopedic Surgery, Sir Run Run Shaw Hospital, Medical College of Zhejiang University, Hangzhou City, China. (3)
Biological Science Research Center, Southwest University, Chongqing, 400715, China (3)
Hamburg University of Applied Sciences (3)
Tianjin Medical University (3)
La Trobe University, Melbourne, Australia (2)
1 Interdisciplinary Research Center on Biology and Chemistry, State Key Laboratory of Chemical Biology, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, Shanghai 201210, China 2 Shanghai Academy of Natural Sciences (SANS), Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, Shanghai 201210, China (2)
Alkali Soil Natural Environmental Science Center, Northeast Forestry University, Harbin 150040, China (2)
Beijing National Laboratory for Molecular Sciences, College of Chemistry and Molecular Engineering, Peking University, Beijing 100871, China. (2)
Lab of Jie Zheng, Neuroscience Research Institute and Department of Neurobiology, School of Basic Medical Sciences, Peking University, Beijing 100083, P.R. China (2)
Tianjin Medical University General Hospital (2)
Hebei Medical University (2)
The University of Chicago (2)
College of Chemistry and Chemical Engineering, Hubei University, Wuhan, 430062, Hubei, P. R. China. (2)
Center for Stem Cell Biology and Tissue Engineering, Key Laboratory for Stem Cells and Tissue Engineering, Ministry of Education, Sun Yat-sen University, Guangzhou, Guangdong, China. (2)
The Hong Kong Polytechnic University (2)
South China Agricultural University (2)
National Key Laboratory of Medical Molecular Biology & Department of Immunology, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences, 5 Dong Dan San Tiao, Dongcheng District, Beijing 100005, China. (2)
CAS Key Laboratory of Separation Science for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China. (2)
Leibniz Institute on Aging – Fritz Lipmann Institute (FLI) Beutenbergstrasse 11 07745 Jena, Germany (2)
Department of Biochemistry and Biophysics, School of Basic Medical Sciences, Peking University Health Science Center, #38 Xueyuan Road, Beijing 100191, China (2)
Northeast Normal University (2)
Hubei University of Medicine, Taihe Hospital (2)
Peking University (2)
Agronomy College/National Key Laboratory of Wheat and Corn Crop/Collaborative Innovation Center of Henan Grain Crops, Henan Agricultural University ,Zhengzhou China (2)
Pacific Northwest National Laboratory (2)

IsPrivate

False (1)

Model Flag

Non Kinetic (1)

Classification

bacteria (1)

Modification

N6-dimethyl-L-lysine (3)
N6 (2)
2x(15)N labeled L-lysine (2)
4x(15)N labeled L-arginine (2)
6-dioxaoctanediamine derivatized cysteine (1)
15.994915 (1)
57.021464 (1)

Study type

Transcription profiling by array (182)
RNA-seq of coding RNA (91)
ChIP-seq (78)
RNA-seq of non coding RNA (18)
Methylation profiling by high throughput sequencing (12)
Unknown experiment type (11)
Methylation profiling by array (10)
Comparative genomic hybridization by array (9)
Other (8)
Transcription profiling by SAGE (4)
Genotyping by high throughput sequencing (3)
ChIP-chip by array (2)
Transcription profiling by RT-PCR (2)
MeDIP-seq (1)
ChIP-chip by tiling array (1)
Plant - High-throughput sequencing (1)
Human - One-color microarray (1)
Animal - High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
ATAC-seq (1)
RIP-seq (1)
Ribo-seq (1)
MicroRNA profiling by array (1)
DNA-seq (1)
RNA-seq of total RNA (1)

Release Date

2025 (3416)
2022 (2939)
2023 (2786)
2024 (2650)
2021 (2200)
2020 (1638)
2019 (1224)
2018 (1052)
2017 (852)
2016 (698)
2015 (639)
2026 (485)
2014 (450)
2013 (340)
2012 (286)
2011 (219)
2010 (167)
2009 (114)
2008 (104)
2007 (50)
2006 (35)
2005 (26)
2004 (12)
2003 (10)
2002 (6)
1999 (5)
2001 (4)
2000 (3)
1998 (1)
1997 (1)

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Cell Membrane Remodeling Mediates Polymyxin B Resistance in Klebsiella pneumoniae: An Integrated Proteomics and Metabolomics Study

Polymyxin B (PB) is introduced into the clinic as the last-line therapy against carbapenem-resistant Klebsiella pneumoniae (CRKP). Unfortunately, increased resistance to PB in Klebsiella pneumoniae (K. pneumoniae) has threatened global health. Resistance of K. pneumoniae ...

2022-03-04 | MTBLS4132 | MetaboLights

Genome-wide identification of kiwifruit K⁺ channel Shaker family members and their response to low-K⁺ stress.

Not available

S-EPMC11378538 | biostudies-literature

Regulation of the Endocytosis and Prion Chaperoning Machineries by Yeast E3 Ubiquitin Ligase Rsp5 as Revealed by Orthogonal Ubiquitin Transfer

Attachment of the ubiquitin (UB) peptide to proteins via the E1-E2-E3 enzymatic machinery regulates diverse biological pathways, yet identification of the substrates of E3 UB ligases remains a challenge. We overcame this challenge by constructing an “orthogonal UB transfer (OUT) cascade with yeast E...

ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast)

2022-10-13 | PXD023688 | Pride