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GenomicsPING 2.0: An R/Bioconductor package for nucleosome positioning using next-generation sequencing data
MNase-Seq and ChIP-Seq have evolved as popular techniques to study chromatin and histone modification. Although many tools have been developed to identify enriched regions, software tools for nucleosome positioning are still limited. We introduce a flexible and powerful open-source R package, PING 2...
ORGANISM(S): Saccharomyces cerevisiae 
2013-07-11 | E-GEOD-47073 | biostudies-arrayexpress
TranscriptomicsComparative Transcriptomics of Soybean Near Isogenic Lines in Response to Phytophthora Sojae
Phytophthora root and stem rot (PRR) of soybean, caused by Phytophthora sojae, is effectively controlled by Rps genes in soybean. Rps genes are race-specific, yet the mechanism of resistance, as well as susceptibility, remains largely unclear. Taking advantage of RNA-seq technology, we sequenced the...
ORGANISM(S): Glycine max 
2014-04-16 | E-GEOD-48524 | biostudies-arrayexpress
UnknownEffects of urotensin-II on cytokines in early acute liver failure in mice.
Not available
S-EPMC4363753 | biostudies-literature
MetabolomicsTranscriptomic and Metabolomics Profiling of Phage–Host Interactions between Phage PaP1 and Pseudomonas aeruginosa
The basic biology of bacteriophage–host interactions has attracted increasing attention due to a renewed interest in the therapeutic potential of bacteriophages. In addition, knowledge of the host pathways inhibited by phage may provide clues to novel drug targets. However, the effect of phage on ba...
2018-05-03 | MTBLS431 | MetaboLights
UnknownYu ping feng san for pediatric allergic rhinitis: A systematic review and meta-analysis of randomized controlled trials.
Not available
S-EPMC8021384 | biostudies-literature
MetabolomicsLow chorionic villous succinate accumulation associates with recurrent spontaneous abortion risk
Dysregulated extravillous trophoblast invasion and proliferation are known to increase the risk of recurrent spontaneous abortion (RSA); however, the underlying mechanism remains unclear. Herein, in our retrospective observational case-control study we show that villous samples from RSA patients, co...
2021-10-06 | MTBLS2148 | MetaboLights
MetabolomicsMetabolomic profiling reveals the effects of early-life lactoferrin intervention on protein synthesis, energy production and antioxidative capacity in the liver of suckling piglets

The objective of this study was to reveal the effects of early life lactoferrin intervention on the liver metabolism in the suckling piglets. Sixty newborn piglets with an average initial body weight (BW) of 1.51 ± 0.05 kg were assigned to the control (CON) group and the lactoferrin (LF) group. P...

2022-03-01 | MTBLS2279 | MetaboLights
ProteomicsOTUB1 Inhibits Autophagy-Dependent Ferroptosis in Hepatocellular Carcinoma by Stabilizing P62 via Non-Canonical Deubiquitination
Analysis of OTUB1-interacting proteins in the MHCC97H hepatocellular carcinoma cell line.
ORGANISM(S): Homo sapiens (Human) 
2026-09-28 | PXD078730 | Pride
Homo sapiens Liver cancer Mhcc97h 
UnknownBiparatopic anti-PCSK9 antibody enhances the LDL-uptake in HepG2 cells.
Not available
S-EPMC11222478 | biostudies-literature
ProteomicsSilkworm spinneret LC-MSMS - Proteome profile of spinneret from the silkworm, Bombyx mori
Spinneret, which locates at the end of the silk gland, is an important tissue for silk spinning. Although it has been discovered for hundreds of years, its particular roles in silk spinning and fiber formation are still unclear. Here we report the first proteome profile of silkworm spinnerets by LC-...
ORGANISM(S): Bombyx mori (Silk moth) 
2017-05-08 | PXD004455 | Pride
Lc-msms Insect tissue Spinneret Silkworm 
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