Zhao Rui R - OmicsDI

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Unknown (110)
Proteomics (55)
Metabolomics (8)
Transcriptomics (4)
Genomics (1)

Organisms

Homo sapiens (28)
Mus musculus (9)
Elizabethkingia anophelis (6)
Plasmodium yoelii yoelii 17XNL (6)
Equidae (6)
Colwellia psychrerythraea 34H (6)
Pseudomonas aeruginosa PABL056 (6)
Balneola vulgaris (6)
Deinococcus proteolyticus MRP (6)
Salmonella enterica subsp. enterica serovar Typhimurium str. ST1489 (6)
uncultured zooxanthellae Symbiodinium (6)
Oecophyllibacter saccharovorans (6)
Formica sp. BOLD:AAA1469 (6)
Alytes obstetricans (6)
Anemonia sulcata (6)
Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1632 (6)
Fructilactobacillus sanfranciscensis DSM 20451 (6)
Streptococcus thermophilus MTCC 5460 (6)
Rhipicephalus microplus (6)
Wolbachia endosymbiont of Schlechtendalia chinensis (6)
Oryza sativa Indica Group x Oryza nivara (6)
Rattus norvegicus (2)
Xenopus tropicalis (1)
Salmonella enterica subsp. enterica serovar Typhimurium (1)
Saccharomyces cerevisiae (1)
Sus scrofa (1)
Glaesserella parasuis (1)
Ganoderma lucidum G.260125-1 (1)
Sus scrofa domesticus (1)
Glycine max (1)

Repository

iProX (29)
MassIVE (10)
jPOST (9)
MetaboLights (6)
pride (6)
biostudies-arrayexpress (4)
GNPS (2)
EGA (1)
PanoramaPublic (1)

Tissue

Cell culture (2)
Eye photoreceptor cell (1)
Retina (1)
Stem cell (1)
Liver (1)

Disease

Glioblastoma (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (6)
Mass spectrometry (3)
Shotgun proteomics (3)
Mass spectrometry assay (2)
NMR spectroscopy (1)
Gel-based experiment (1)
Affinity purification coupled with mass spectrometry proteomics (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

Q Exactive Plus (4)
Orbitrap Fusion Lumos (4)
Q Exactive HF-X (3)
Liquid Chromatography MS - negative - reverse phase (2)
Liquid Chromatography MS - positive - reverse phase (2)
TSQ Quantum Ultra (1)
MicrOTOF-Q II (1)
Q Exactive (1)
Orbitrap Exploris 480 (1)
Orbitrap Fusion (1)
Orbitrap Eclipse (1)
Q Exactive HF (1)
Gas Chromatography MS - positive - medium polarity - Flame ionisation detector MS - positive (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Gas Chromatography MS - Positive (GC-MS (Positive)) (1)
Liquid Chromatography MS - alternating - reverse-phase (1)
Nuclear Magnetic Resonance (NMR) - (1)

Publication Date

2021 (13)
2022 (8)
2020 (7)
2019 (7)
2025 (6)
2024 (5)
2023 (3)
2026 (3)
2016 (2)
2010 (2)
2009 (1)

CHEBI ID

CHEBI:15366 (3)
CHEBI:16526 (2)
CHEBI:28885 (2)
CHEBI:132544 (2)
CHEBI:140948 (2)
CHEBI:1387 (2)
CHEBI:132543 (2)
CHEBI:17302 (2)
CHEBI:132538 (2)
CHEBI:140944 (2)
CHEBI:82914 (2)
CHEBI:132539 (2)
CHEBI:140940 (2)
CHEBI:140949 (2)
CHEBI:140943 (2)
CHEBI:132502 (2)
CHEBI:42111 (2)
CHEBI:32425 (2)
CHEBI:15882 (2)
CHEBI:44247 (2)
CHEBI:28792 (2)
CHEBI:27226 (2)
CHEBI:140947 (2)
CHEBI:87986 (2)
CHEBI:36036 (2)
CHEBI:70749 (2)
CHEBI:68830 (2)
CHEBI:86050 (2)
CHEBI:49000 (2)
CHEBI:64561 (2)

Metabolite Name

Indole (2)
Acetic acid (2)
Quercetagetin 4'-methyl ether 7-(6-(E)-caffeylglucoside) (1)
Cyanidin 3-(6''-p-coumarylglucoside)-5-4''',6'''-dimalonylglucoside) (1)
PC(O-20:0/19:0) (1)
Punaglandin 7 (1)
1-O-myristoyl-Cer(d18:1/16:0) (1)
PI(14:1(9Z)/18:2(9Z,12Z)) (1)
3-(4-hydroxy-3-methoxyphenyl)-11,19-bis(4-hydroxyphenyl)-4,12,20-trioxaheptacyclo[16.6.1.1?,?.1??,??.0??,??.0?,??.0??,??]heptacosa-1(25),5,7,9(27),13,15,17(26),21,23-nonaene-7,15,23-triol (1)
PE-GlcGlcDG(P-14:0/16:1(9Z)) (1)
Delphinidin 3-robinobioside-5-(6-(E)-p-coumarylglucoside) (1)
Ortho-hydroxyatorvastatin (1)
Cer(t20:0/26:0(2OH)) (1)
{4-[5,7-dihydroxy-8-(3-methylbut-2-en-1-yl)-4-oxo-3,4-dihydro-2H-1-benzopyran-3-yl]-2-hydroxy-6-(3-methylbut-2-en-1-yl)phenyl}oxidanesulfonic acid (1)
Manumycin (1)
3-Geranyl-4,2',4',6'-tetrahydroxy-5-prenyldihydrochalcone (1)
Calabricoside B (1)
3-hydroxy-2-[3-methoxy-4-(sulfooxy)phenyl]-7-(sulfinooxy)-3,4-dihydro-2H-1-benzopyran-5-olate (1)
Orientin 2''-O-xyloside-6''-ferulate (1)
N-(2-methyl-3-chloro-4-hydroxyphenyl)anthranilic acid (1)
6-{[2-(4-{[3-({3,4-dihydroxy-4-[(1H-indole-3-carbonyloxy)methyl]oxolan-2-yl}oxy)-4,5-dihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}phenyl)-4-oxo-3,4-dihydro-2H-1-benzopyran-7-yl]oxy}-3,4,5-trihydroxyoxane-2-carboxylic acid (1)
{6,7,8,11,12,13,21,22-octahydroxy-3,16-dioxo-2,17,20-trioxatetracyclo[17.3.1.0?,?.0??,??]tricosa-4,6,8,10,12,14-hexaen-23-yl}oxidanesulfonic acid (1)
Leucadenone C (1)
{6,7,8,11,12,13,21,23-octahydroxy-3,16-dioxo-2,17,20-trioxatetracyclo[17.3.1.0?,?.0??,??]tricosa-4,6,8,10,12,14-hexaen-22-yl}oxidanesulfonic acid (1)
1alpha,25-dihydroxy-(26,26)-(27,27)-diethanovitamin D3 / 1alpha,25-dihydroxy-(26,26)-(27,27)-diethanocholecalciferol (1)
[4-({[2,3-dihydroxy-6-(hydroxymethyl)-5-(3,4,5-trihydroxybenzoyloxy)oxan-4-yl]oxy}carbonyl)-2,6-dihydroxyphenyl]oxidanesulfonic acid (1)
3-(3,4-dimethoxyphenyl)-N-{2-[3-methoxy-4-(sulfooxy)phenyl]ethyl}prop-2-enimidic acid (1)
Delphinidin 3-(6''-malonylsambubioside) (1)
Leucadenone B (1)
6-{5-[6-(3,4-dihydroxyphenyl)-13-hydroxy-4-oxo-8-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-3,11-dioxatricyclo[8.4.0.0?,?]tetradeca-1,7,9-trien-12-yl]-2-hydroxyphenoxy}-3,4,5-trihydroxyoxane-2-carboxylic acid (1)

Study type

Transcription profiling by array (2)
Unknown experiment type (1)
RNA-seq of coding RNA (1)

Release Date

2022 (16)
2021 (16)
2025 (13)
2024 (12)
2015 (10)
2016 (9)
2023 (9)
2019 (9)
2017 (6)
2020 (5)
2018 (3)
2010 (2)
2009 (1)
2026 (1)
2014 (1)
2005 (1)

Lab affiliation

HGSC, Baylor College of Medicine (1)
Biochemistry and Molecular Genetics, University of Colorado Anschutz Medical Campus, USA (1)
University of Victoria, Department of Mechanical Engineering, PO Box 1700 STN CSC, Victoria, BC, V8W 2Y2, Canada (1)
West No.30 Xiao Hong Shan, Wuhan, Hubei 430071, China Email: hurui@apm.ac.cn (1)
Wuhan University (1)
China Agricultural University (1)

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Metabolomic insights into the browning of the peel of bagging 'Rui Xue' apple fruit

BACKGROUND: Bagging is one of the most important techniques for the production of high-quality fruits. In the act of cultivation, we found a new kind of browning in peel of the apple fruit that occurs before harvest and worsens during the storage period. There are many studies on...

2021-04-09 | MTBLS2384 | MetaboLights

Two novel VPS33B mutations in a patient with arthrogryposis, renal dysfunction and cholestasis syndrome in mainland China.

Not available

S-EPMC3886028 | biostudies-literature

NMAsurv: An R Shiny application for network meta-analysis based on survival data.

Not available

S-EPMC12657653 | biostudies-literature

UCSCXenaShiny: an R/CRAN package for interactive analysis of UCSC Xena data.

Not available

S-EPMC8723150 | biostudies-literature

Association of keratin 8/18 variants with non-alcoholic fatty liver disease and insulin resistance in Chinese patients: A case-control study.

Not available

S-EPMC5473123 | biostudies-literature

Gestational palmitic acid suppresses embryonic GATA-binding protein 4 signaling and causes congenital heart disease

Dysregulated maternal fatty acid metabolism increases the risk of congenital heart disease (CHD) in offspring with an unknown mechanism, and the effect of folic acid fortification in preventing CHD is controversial. Using gas chromatography coupled to either a flame ionization detector or mass spect...

2023-03-24 | MTBLS6982 | MetaboLights

All-Trans Retinoic Acid Ameliorates Myocardial Ischemia/Reperfusion Injury by Reducing Cardiomyocyte Apoptosis.

Not available

S-EPMC4506146 | biostudies-literature

B-cell Function Gene Mutations in Diffuse Large B-cell Lymphoma: A Retrospective Cohort Study.

Not available

S-EPMC5474506 | biostudies-literature

Design and Fabrication of Nanofibrous Dura Mater with Antifibrosis and Neuroprotection Effects on SH-SY5Y Cells.

Not available

S-EPMC9099771 | biostudies-literature

Gut microbial release of ferulic acid from germinated quinoa alleviates obesity-associated cognitive impairment via activation of PINK1/Parkin-mediated mitophagy in the hippocampus

Background Obesity is a major risk factor for cognitive impairment and related neurodegenerative disorders. Whole grains are rich in polyphenols and dietary fiber, and their consumption has been associated with improvements in obesity and cognitive deficits. Gut microbial genes encode enzymes tha...

2026-03-30 | MTBLS14185 | MetaboLights

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178 Results

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OmicsDI is part of the ELIXIR infrastructure

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