Zhao Yin Y - OmicsDI

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Unknown (3190)
Proteomics (97)
Transcriptomics (19)
Genomics (16)
Metabolomics (10)
Multiomics (4)
Models (1)

Organisms

Aerococcus urinae NBRC 15544 = CCUG 36881 (51)
Andropogon gerardi (51)
Bacteria (51)
Bartonella quintana JK 31 (51)
Canis lupus familiaris (51)
Homo sapiens (41)
Mus musculus (11)
Oryza sativa (3)
Caenorhabditis elegans (2)
Gallus gallus (2)
Rattus norvegicus (2)
Severe acute respiratory syndrome coronavirus 2 (1)
Haloferax mediterranei (1)
Bean pod mottle virus (1)
Bombyx mori (1)
Populus trichocarpa (1)
502593 (1)
Bombus terrestris (1)
Bos taurus (1)
Brassica napus (1)
Candida albicans (1)
Chaetomium globosum (1)
Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 (1)
Escherichia coli (1)
Lamprigera yunnana (1)
Macrothele (1)
Oryza sativa Japonica Group (1)
Rattus rattus (1)
Sorghum bicolor (1)
unclassified Sparassidae (1)

Repository

pride (51)
iProX (41)
biostudies-arrayexpress (24)
EGA (11)
MetaboLights (10)
PeptideAtlas (3)
MassIVE (2)
BioModels (1)

Tissue

Cell culture (15)
Others (3)
Brain (3)
Leaf (3)
Liver (3)
Primary cell (3)
Early embryonic cell (2)
Hepatocyte (2)
Kidney (2)
Lung (2)
Placenta (2)
Skin (2)
Blood plasma (1)
Cardiac muscle cell (1)
Epithelial cell (1)
Fungal cell (1)
Gastric gland (1)
HeLa cell (1)
Heart (1)
Macrophage (1)
Permanent cell line cell (1)
Prostate neuroendocrine cell (1)
Retina (1)
SW-1990 cell (1)
Stem cell (1)
T cell (1)
Urine (1)
Whole body (1)

Disease

Disease free (2)
COVID-19 (1)
Cardiovascular system disease (1)
Cervix carcinoma (1)
Chronic bronchitis (1)
Chronic obstructive pulmonary disease (1)
Gastric adenocarcinoma (1)
Kidney disease (1)
Prostate neuroendocrine neoplasm (1)
Retinitis pigmentosa (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (51)
Shotgun proteomics (19)
Affinity purification coupled with mass spectrometry proteomics (11)
Bottom-up proteomics (11)
Mass spectrometry (9)
Gel-based experiment (9)
Mass spectrometry assay (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Data-dependent acquisition (1)
Mass spectrometry imaging (1)
SRM/MRM (1)
Top-down proteomics (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (6)
Liquid Chromatography MS - positive - reverse phase (5)
LTQ Orbitrap Elite (2)
Illumina HiSeq 2000 (1)
LTQ Orbitrap Velos (1)
Q Exactive HF-X (1)
Gas Chromatography MS - (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)
QExactive (1)

Publication Date

2025 (22)
2022 (22)
2023 (11)
2021 (11)
2024 (9)
2014 (8)
2015 (7)
2026 (7)
2019 (7)
2017 (6)
2013 (5)
2020 (5)
2010 (4)
2018 (4)
2012 (1)
2011 (1)
2009 (1)
2008 (1)

UNIPROT ID/AC

A0A024R563 (3)
A0A024R8H9 (3)
A0A024RAN2 (3)
A0A024RC46 (3)
A0A087WUD1 (3)
A0A087WVZ5 (3)
A0A087WWK8 (3)
A0A087WXI0 (3)
A0A087WZE9 (3)
A0A087X1S3 (3)
A0A0A0MR66 (3)
A0A0A0MS51 (3)
A0A0A0MSA7 (3)
A0A0B4J220 (3)
A0A0C4DG89 (3)
A0A0C4DGT3 (3)
A0AV96 (3)
A0AVT1 (3)
A0FGR8 (3)
A0FGR8-2 (3)
A0FGR8-6 (3)
A0JLT2 (3)
A0JNW5 (3)
A0MZ66 (3)
A0PJW6 (3)
A0PK00 (3)
A1A4S6 (3)
A1L0T0 (3)
A1L170 (3)
A1L390 (3)

ENSEMBL ID

ENSG00000147251 (3)
ENSG00000170477 (3)
ENSG00000247315 (3)

CHEBI ID

CHEBI:7916 (5)
CHEBI:16828 (5)
CHEBI:30805 (4)
CHEBI:55328 (4)
CHEBI:27248 (4)
CHEBI:30832 (4)
CHEBI:15756 (4)
CHEBI:74078 (3)
CHEBI:74062 (3)
CHEBI:17833 (3)
CHEBI:27410 (3)
CHEBI:16708 (3)
CHEBI:73704 (3)
CHEBI:17748 (3)
CHEBI:28044 (3)
CHEBI:17012 (3)
CHEBI:17405 (3)
CHEBI:26806 (3)
CHEBI:73134 (3)
CHEBI:28842 (3)
CHEBI:16753 (3)
CHEBI:18050 (3)
CHEBI:15318 (3)
CHEBI:17568 (3)
CHEBI:16750 (3)
CHEBI:16335 (3)
CHEBI:17895 (3)
CHEBI:17295 (3)
CHEBI:17596 (3)
CHEBI:16914 (3)

Metabolite Name

Palmitic acid (4)
L-Tryptophan (4)
4-Pyridoxic acid (3)
Adenosine (3)
Urocanic acid (3)
Pantetheine (3)
Dodecanoic acid (3)
Adenine (3)
Guanosine (3)
L-Phenylalanine (3)
Alpha-N-Phenylacetyl-L-glutamine (2)
Acadesine (2)
Thiamine monophosphate (2)
Berberine (2)
4-Hydroxycinnamic acid (2)
3-methylcytidine (2)
L-Saccharopine (2)
N1-Methyl-2-pyridone-5-carboxamide (2)
Indoleacetic acid (2)
Gentamicin (2)
Uracil (2)
Pantothenate (2)
Kynurenic acid (2)
1-Hexadecanoyl-sn-glycero-3-phosphoethanolamine (2)
Purine (2)
L-Threonine (2)
N-Acetylneuraminic acid (2)
Taurine (2)
Stearic acid (2)
Lysine (2)

IsPrivate

False (1)

Submitter Keywords

COVID-19 (1)

Modelling Approach

Population model (1)

Study type

Transcription profiling by array (11)
RNA-seq of coding RNA (7)
ChIP-seq (3)
Methylation profiling by high throughput sequencing (2)
MicroRNA profiling by array (1)

Release Date

2025 (537)
2022 (441)
2024 (431)
2023 (426)
2021 (320)
2020 (251)
2019 (163)
2018 (147)
2017 (131)
2016 (88)
2026 (76)
2015 (62)
2014 (50)
2013 (35)
2012 (21)
2010 (10)
2009 (9)
2011 (5)
2008 (5)
2004 (3)
2005 (1)
2002 (1)
2000 (1)

Lab affiliation

Peking University (4)
Lab of Jie Zheng, Neuroscience Research Institute and Department of Neurobiology, School of Basic Medical Sciences, Peking University, Beijing 100083, P.R. China (2)
The First Affiliated Hospital of Zhejiang University School of Medicine (2)
+8617812007228 (1)
Affiliated Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology (1)
Associate Professor of Chemistry, University of California, Riverside (1)
Beijing Advanced Innovation Center for Soft Matter Science and Engineering, Beijing University of Chemical Technology (1)
CAS Center for Excellence in Molecular Plant Science(CEMPS)/Institute of Plant Physiology and Ecology, Chinese Academy of Sciences (CAS) (1)
College of Pharmacy, Jinan University, Guangzhou, China (1)
Department of Cancer Sciences, Cleveland Clinic, 9500 Euclid Avenue, NE60, Cleveland, OH, 44195, USA. (1)
Department of Chemistry and Center for Diagnostics and Therapeutics, Georgia State University, Atlanta, GA 30303, USA (1)
Department of Molecular and Cellular Oncology, MD Anderson Cancer Center, Houston, TX USA (1)
Department of Pathology, Institute of Systems Biomedicine, School of Basic Medical Sciences, Beijing Key Laboratory of Tumor Systems Biology, Peking University Health Science Center, Beijing, China (1)
Department of Pharmacology, 303 E. Superior Street, Lurie 3-103, Chicago, IL 60611 (1)
Division of Plastic and Reconstructive Surgery, The First Affiliated Hospital of Sun Yat-sen University (1)
Georgia State University (1)
Guang'anmen Hospital of China Academy of Chinese Medical Sciences (1)
Institute of Systems Biomedicine, Department of Pathology, School of Basic Medical Sciences, Beijing Key Laboratory of Tumor Systems Biology, Peking-Tsinghua Center of Life Sciences, Peking University Health Science Center, Beijing 100191, China. (1)
Institute of Systems Biomedicine, Peking University Health Science Center (1)
Institute of Systems Biomedicine, Peking University Health Science Center, Beijing 100191, China. (1)
Jinan University (1)
Key Laboratory of Brain Functional Genomics of Ministry of Education, Shanghai Key Laboratory of Brain Functional Genomics, and Shanghai Key Laboratory of Regulatory Biology, School of Life Sciences, East China Normal University, Shanghai, 100021, China (1)
Key Laboratory of Functional Protein Research of Guangdong Higher Education Institutes, Institute of Life and Health Engineering, College of Life Science and 9 Technology, Jinan University, Guangzhou 510632, China (1)
Laboratory of Vaccine and Antibody Engineering, Beijing Institute of Biotechnology, Beijing, China (1)
Michigan Center for Translational Pathology, University of Michigan, Ann Arbor, MI, USA (1)
Ningbo University (1)
Northeast forestry university (1)
PEKING UNIVERSITY (1)
Ph.D. and Professor Department of Chemistry and Center for Diagnostics & Therapeutics (CDT) Georgia State University (1)
Professor of Pharmacology and Pathology Northwestern Univeristy, Feinberg School of Medcine, Ward Building Room 9-176 303 E Chicago Avenue Chicago IL 60611 (1)

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Regulation of the Endocytosis and Prion Chaperoning Machineries by Yeast E3 Ubiquitin Ligase Rsp5 as Revealed by Orthogonal Ubiquitin Transfer

Attachment of the ubiquitin (UB) peptide to proteins via the E1-E2-E3 enzymatic machinery regulates diverse biological pathways, yet identification of the substrates of E3 UB ligases remains a challenge. We overcame this challenge by constructing an “orthogonal UB transfer (OUT) cascade with yeast E...

ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast)

2022-10-13 | PXD023688 | Pride

Ubiquitin Lc-ms/ms

Genome-wide survey of YY1 targets in C2C12 cells by High-throughput sequencing

By applying ChIP-seq, we generated genome-wide maps of YY1 in skeletal myoblasts and myotubes. We found that YY1 binds to 1820 confident target with a large portion residing in the intergenic regions. In addition, YY1 was found to activate many loci, and there is no significant overlap between YY1 a...

ORGANISM(S): Mus musculus

2013-08-15 | E-GEOD-45875 | biostudies-arrayexpress

Cerebral Micro-Structural Changes in COVID-19 Patients - An MRI-based 3-month Follow-up Study.

Not available

S-EPMC7396952 | biostudies-literature

Evolution of Yin and Yang isoforms of a chromatin remodeling subunit precedes the creation of two genes.

Not available

S-EPMC6752949 | biostudies-literature

Qingxuan Runmu Yin alleviates dry eye disease via inhibition of the HMOX1/HIF-1 pathway affecting ferroptosis.

Not available

S-EPMC11425584 | biostudies-literature

Activation of Autophagy Through the NLRP3/mTOR Pathway: A Potential Mechanism for Alleviation of Pneumonia by QingFei Yin.