Zheng Di D - OmicsDI

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Unknown (430)
Transcriptomics (117)
Proteomics (22)
Genomics (10)
Metabolomics (10)

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Homo sapiens (55)
Mus musculus (38)
Saccharomyces cerevisiae (6)
Danio rerio (3)
synthetic construct (2)
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Caenorhabditis elegans (2)
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Sphingomonas sp. ATCC 31555 (1)
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biostudies-arrayexpress (126)
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Mass Spectrometry (12)
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Instrument Platform

Q Exactive HF (5)
NextSeq 500 (4)
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Maxwell 16 LEV-plant RNA kit (2)
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Publication Date

2013 (22)
2012 (20)
2015 (17)
2014 (15)
2016 (13)
2011 (12)
2010 (11)
2026 (9)
2021 (9)
2025 (7)
2018 (4)
2019 (3)
2009 (3)
2024 (3)
2022 (3)
2023 (2)
2020 (1)
2008 (1)
2007 (1)
2006 (1)
2017 (1)

CHEBI ID

CHEBI:28300 (3)
CHEBI:30769 (3)
CHEBI:30915 (3)
CHEBI:6650 (3)
CHEBI:1148 (2)
CHEBI:15611 (2)
CHEBI:15676 (2)
CHEBI:15727 (2)
CHEBI:15741 (2)
CHEBI:15760 (2)
CHEBI:15887 (2)
CHEBI:15891 (2)
CHEBI:15999 (2)
CHEBI:16344 (2)
CHEBI:16411 (2)
CHEBI:16704 (2)
CHEBI:17148 (2)
CHEBI:17351 (2)
CHEBI:17596 (2)
CHEBI:17712 (2)
CHEBI:17750 (2)
CHEBI:17775 (2)
CHEBI:17895 (2)
CHEBI:18012 (2)
CHEBI:18089 (2)
CHEBI:18243 (2)
CHEBI:22653 (2)
CHEBI:28683 (2)
CHEBI:30887 (2)
CHEBI:32816 (2)

Metabolite Name

(+)-syringaresinol beta-D-glucoside (1)
(1-Methoxy-pentyl)-cyclopropane (1)
(1S,3S,4R,5R)-3-{[(2E)-3-(3,4-dihydroxyphenyl)-2-propenoyl]oxy}-1,4,5-trihydroxycyclohexanecarboxylic acid (1)
(2E)-3-[4-(beta-D-Glucopyranosyloxy)-3-methoxyphenyl]acrylic acid (1)
(2E)-N-[2-(3,4-dihydroxyphenyl)ethyl]-3-(3,4-dimethoxyphenyl)acrylamide (1)
(3E)-1-hydroxy-4-[(1R)-2,6,6-trimethyl-4-oxo-2-cyclohexen-1-yl]-3-buten-2-yl beta-D-glucopyranoside (1)
(3E)-4-[(1S)-1-Hydroxy-2,6,6-trimethyl-4-oxo-2-cyclohexen-1-yl]-3-buten-2-yl beta-D-glucopyranoside (1)
(3R)-(+)-3-Acetamidopyrrolidine (1)
(3R)-3,7-dimethyl-1,6-octadien-3-yl 6-O-alpha-L-arabinopyranosyl-beta-D-glucopyranoside (1)
(3R,5R)-3,4,5-tris{[(2E)-3-(3,4-dihydroxyphenyl)prop-2-enoyl]oxy}-1-hydroxycyclohexane-1-carboxylic acid (1)
(E)-Hex-3-enyl 2,3,4,5,6-pentafluorobenzoate (1)
(N6+N1)-Acetyl-Lys (1)
.alpha.-Acetobutyrolactone (1)
.alpha.-D-Galactopyranoside, methyl 2,3-bis-O-(trimethylsilyl)-, cyclic phenylboronate (1)
.alpha.-D-Mannopyranose, 5TMS derivative (1)
.beta.-D-Glucopyranose, 5TMS derivative (1)
.beta.-Eucaine (1)
.gamma.-Tocopherol, TMS derivative (1)
1,1'-Biphenyl, 4,4'-dinitro- (1)
1,2,2-Trimethylpropyl dimethylphosphinate (1)
1,2,4,5-Tetramethyl-3-neopentylbenzene (1)
1,2,4-Benzenetricarboxylic acid, 1,2-dimethyl ester (1)
1,2,4-Triazolo[4,3-a]pyrazine-8-carboxylic acid, 2,3-dihydro-3-oxo-, methyl ester (1)
1,2,4-triazines (1)
1,2-Diiodoethylene (1)
1,3,2-Oxazaborolane, 2-butyl- (1)
1,3,5-Triazine-2,4-diamine, N-ethyl-6-methoxy- (1)
1,3-Benzenedicarboxamide, 5-nitro-N,N'-diphenyl- (1)
1,3-Benzenediol, o-(4-ethylbenzoyl)-o'-(3-methylbenzoyl)- (1)
1,3-Diphenyl-2-azafluorene (1)

Study type

Transcription profiling by array (60)
RNA-seq of coding RNA (37)
ChIP-seq (7)
Other (6)
RNA-seq of coding RNA from single cells (5)
RNA-seq of non coding RNA (3)
Transcription profiling by SAGE (2)
Unknown experiment type (2)
Methylation profiling by high throughput sequencing (2)
Baseline (1)
Comparative genomic hybridization by array (1)

Release Date

2022 (53)
2020 (48)
2016 (44)
2021 (43)
2015 (39)
2024 (39)
2025 (36)
2023 (36)
2014 (33)
2013 (32)
2018 (29)
2012 (27)
2019 (23)
2017 (20)
2011 (15)
2026 (13)
2010 (13)
2009 (6)
2008 (3)
2007 (2)
2006 (1)
2003 (1)

Lab affiliation

BGI Research (3)
Ben May department of cancer research, The university of Chicago (1)
China-Japan Friendship Hospital, Beijing, China (1)
China-Japan Friendship Hospital, China (1)
Institute of Marine Sciences and Guangdong Provincial Key Laboratory of Marine Biotechnology, Shantou University, Shantou 515063, China (1)
Laboratory of Integrative Biology, Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences; Guangzhou, 510530, China. (1)
Medicinal Chemistry, School of Pharmacy, University of Washington, USA (1)
School of Food Science and Engineering, Key Laboratory of Food Nutrition and Functional Food of Hainan Province, Hainan University, Haikou 570228, China Collaborative Innovation Center of One Health, Hainan University (1)
The University of Chicago (1)
xuzhu medical university (1)

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Lsr2, a novel cyclic di-GMP receptor, regulate the synthesis of keto-mycolic acid and control biofilm formation in mycobacteria

Cyclic di-GMP (c-di-GMP) is a well-known second messenger that plays a key role in many physiological processes in bacteria. The synthesis of lipids is essential for bacterial biofilm formation. However, whether c-di-GMP signaling modulates the synthesis of lipid and further regulates biofilm for...

2023-12-12 | MTBLS7053 | MetaboLights

A WYL transcription factor regulates Lactiplantibacillus plantarum intestinal colonization via perceiving c-di-GMP

The WYL transcription factor (LP_RS00300) is a c-di-GMP effector in L. plantarum WCFS1. LP_RS00300 binds to a special motif within the coding sequence, impeding the transcriptional elongation of LP_RS05345 and LP_RS05225, which encode mucus binding proteins (MucBPs). The perception of c-di-GMP by th...

ORGANISM(S): Lactobacillus plantarum WCFS1 Bacteria

2025-02-14 | PXD053948 | Pride

Transcriptomic analyses of Myc-induced zebrafish liver cancer

To study the characteristics and mechanisms of Myc-induced zebrafish liver tumor, next-generation sequencing-based SAGE analyses were used to examine the transcriptomes of tumor and control samples. The results indicated that ribosome proteins were overwhelmingly up-regulated in the Myc-induced live...

ORGANISM(S): Danio rerio

2013-04-02 | E-GEOD-40745 | biostudies-arrayexpress

Choline metabolism modulates cyclic-di-GMP signaling and virulence of Pseudomonas aeruginosa in a macrophage infection model.

Not available

S-EPMC11681757 | biostudies-literature

The Dietary Index for Gut Microbiota and Live Microbe Intake in Relation to Visceral Fat Obesity: Evidence From NHANES With Vitamin D as a Mediator.

Not available

S-EPMC12900904 | biostudies-literature

Cyclic-di-GMP Regulates the Quorum-Sensing System and Biocontrol Activity of Pseudomonas fluorescens 2P24 through the RsmA and RsmE Proteins.

Not available

S-EPMC7688223 | biostudies-literature

Lsr2 acts as a cyclic di-GMP receptor that promotes keto-mycolic acid synthesis and biofilm formation in mycobacteria.