Zheng Ye Y - OmicsDI

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Unknown (1922)
Proteomics (50)
Genomics (9)
Metabolomics (9)
Transcriptomics (5)

Organisms

Bartonella quintana JK 31 (24)
Bombyx mori (24)
Onchocerca volvulus (24)
Klebsiella pneumoniae (24)
Musca domestica (24)
Brugia malayi (24)
Schizosaccharomyces pombe (24)
Cnidaria (24)
Streptomyces coelicolor A3(2) (24)
Sus scrofa (24)
Human immunodeficiency virus 1 (24)
Oryza sativa Indica Group (24)
Eukaryota (24)
Sinorhizobium meliloti BL225C (24)
Vitis (24)
Sus scrofa domesticus (24)
Ostreococcus tauri (24)
Saccharomyces cerevisiae (24)
Synechocystis sp. PCC 6803 (24)
Homo sapiens (19)
Mus musculus (9)
Drosophila melanogaster (3)
Streptococcus suis (2)
Cervus nippon (1)
Triticum aestivum subsp. tibeticum (1)
Macaca fascicularis fascicularis (1)
Triticum aestivum (1)
Severe acute respiratory syndrome coronavirus 2 (1)
Rattus norvegicus (1)
Sus scrofa domesticus (1)

Repository

pride (24)
iProX (23)
MetaboLights (9)
biostudies-arrayexpress (7)
EGA (7)
jPOST (2)
MassIVE (1)

Tissue

Cell culture (5)
Epithelial cell (3)
Testis (2)
Heart (2)
Leaf (2)
Gastric mucosa (1)
Bark (1)
Bladder (1)
Shoot (1)
Bone marrow (1)
Permanent cell line cell (1)
Blood serum (1)
Stem cell (1)
Stomach (1)
Lung (1)
Vascular tissue (1)
Brain (1)
Blood plasma (1)
Kidney (1)
Liver (1)

Disease

Gastric ulcer (1)
Bacterial infectious disease (1)
Gastric adenocarcinoma (1)
Breast cancer (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (24)
Mass spectrometry (8)
Shotgun proteomics (6)
Data-dependent acquisition (5)
Affinity purification coupled with mass spectrometry proteomics (4)
Data-independent acquisition (4)
Gel-based experiment (3)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000 (1)
NMR spectroscopy (1)
Mass spectrometry imaging (1)
Bottom-up proteomics (1)
Top-down proteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (5)
Liquid Chromatography MS - negative - reverse phase (4)
Illumina HiSeq 2000 (2)
HiSeq X Ten (1)
Q Exactive HF (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Bruker (1)
Liquid Chromatography MS - positive (1)
Gas Chromatography MS - (1)

Publication Date

2025 (17)
2024 (9)
2023 (8)
2021 (7)
2026 (6)
2022 (6)
2014 (4)
2019 (3)
2020 (2)
2018 (2)
2012 (1)
2010 (1)

CHEBI ID

CHEBI:5556 (2)
CHEBI:31550 (2)
CHEBI:139131 (2)
CHEBI:66848 (2)
CHEBI:141521 (2)
CHEBI:172591 (2)
CHEBI:136629 (2)
CHEBI:174173 (2)
CHEBI:73218 (2)
CHEBI:166727 (2)
CHEBI:36259 (2)
CHEBI:88773 (2)
CHEBI:172628 (2)
CHEBI:82966 (2)
CHEBI:28800 (2)
CHEBI:177855 (2)
CHEBI:177741 (2)
CHEBI:8774 (2)
CHEBI:132538 (2)
CHEBI:72794 (2)
CHEBI:16390 (2)
CHEBI:187204 (2)
CHEBI:37998 (2)
CHEBI:168628 (2)
CHEBI:166724 (2)
CHEBI:9347 (2)
CHEBI:169041 (2)
CHEBI:137157 (2)
CHEBI:79283 (2)
CHEBI:145278 (2)

Metabolite Name

Nitecapone (2)
3beta-(3-methyl-butanoyloxy)-villanovane-13alpha,17-diol (2)
Lithocholyltaurine (2)
16-Hydroxy hexadecanoic acid (2)
3-hydroxybutyrylcarnitine (2)
7-Sulfocholic acid (2)
Epothilone B (2)
Dehydroepiandrosterone sulfate (2)
Creatine (2)
Arachidonic acid (2)
Choline (2)
251.10049 (1)
117.07898 (1)
181.07390 (1)
105.04260 (1)
115.06333 (1)
165.07898 (1)
149.05106 (1)
146.10553 (1)
131.09464 (1)
131.05824 (1)
119.05824 (1)
155.06947 (1)
179.07938 (1)
75.03203 (1)
147.05316 (1)
103.06333 (1)
190.09535 (1)
133.03751 (1)
174.11168 (1)

Study type

Comparative genomic hybridization by array (2)
RNA-seq of coding RNA (2)
Animal - High-throughput sequencing (1)
DNA-seq (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2025 (348)
2023 (254)
2022 (243)
2024 (210)
2021 (203)
2020 (187)
2019 (101)
2018 (79)
2017 (64)
2015 (56)
2016 (55)
2026 (39)
2014 (36)
2011 (15)
2012 (13)
2013 (8)
2010 (7)
2008 (5)
2006 (2)
2005 (2)
2009 (1)
2004 (1)

Lab affiliation

CAS Key Laboratory of Separation Sciences for Analytical Chemistry, National Chromatographic R&A Center, Dalian Institute of Chemical Physics, Chinese Academy of Sciences (CAS), Dalian 116023, China (2)
State Key Laboratory of Reproductive Medicine and Offspring Health， Nanjing Medical University, Nanjing, China. (2)
Department of Radiation Oncology, Nanfang Hospital, Southern Medical University (1)
Chengdu university of traditional chinese medicine (1)
Ben May department of cancer research, The university of Chicago (1)
MOE Key Laboratory of Tumor Molecular Biology and State Key Laboratory of Bioactive Molecules and Druggability Assessment, Institute of Life and Health Engineering, Jinan University, Guangzhou, China (1)
xiangya hospital (1)
Department of Orthopedics, the Eighth Affiliated Hospital of Sun Yat-sen University, Shenzhen 518003, P.R. China (1)
College of Pharmacy, Jinan University, Guangzhou 510632, P. R. China (1)
State Key Laboratory of Rice Biology and Breeding, Institute of Biotechnology, Zhejiang University (1)
1 Shanghai Key Laboratory of Tuberculosis, Shanghai Pulmonary Hospital, Tongji University School of Medicine, Shanghai 200433, PR China 2 Department of Microbiology and Immunology, Tongji University School of Medicine, Shanghai 200049, PR China 3 Clinical Translation Research Center, Shanghai Pulmonary Hospital, Tongji University School of Medicine, Shanghai 200433, China. (1)
Fujian Agriculture and Forestry University (1)
Medical Primate Research Center, Institute of Medical Biology, Chinese Academy of Medical Sciences/Peking Union Medical College, Kunming , China (1)
State Key Laboratory of Respiratory Disease, National Clinical Research Center for Respiratory Disease, Guangzhou Institute of Respiratory Health, the First Affiliated Hospital of Guangzhou Medical University, Guangzhou 510182, China (1)
Department of Urology,Sun Yat-sen University Cancer Center,Guangzhou 510060,China (1)
Hu Nan (1)
Sun Yat-sen University (1)
HHubei Academy of Agricultural Sciences, Wuhan, China ubei Academy of Agricultural Sciences, Wuhan, China (1)
Department of General Surgery & Guangdong Provincial Key Laboratory of Precision Medicine for Gastrointestinal Tumor, Nanfang Hospital, Southern Medical University, Guangzhou, Guangdong, China; Cancer Center of Beijing Tsinghua Changgung Hospital, School of Clinical Medicine, Tsinghua Medicine, Tsinghua University, Beijing, China (1)
Soochow University (1)
Shanghai Sixth People's Hospital, Shanghai (1)
Nankai University, China (1)

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Localized DNA tetrahedrons assisted catalytic hairpin assembly for the rapid and sensitive profiling of small extracellular vesicle-associated microRNAs.

Not available

S-EPMC9714172 | biostudies-literature

Quantitative high-throughput screening identifies cytoprotective molecules that enhance SUMO conjugation via the inhibition of SUMO-specific protease (SENP)2.

Not available

S-EPMC5892725 | biostudies-literature

Proteome and differential proteomic analysis of ramie stem bark

According to a previous study on the microscopic examination of stem barks in ramie, bast fibers from different parts of stem bark showed distinct differences at the developmental level: specifically, the barks in the top part of stem (TPS) did not initiate fiber growth, whereas barks in the middle ...

ORGANISM(S): Boehmeria nivea (Chinese grass) (Urtica nivea)

2022-02-17 | PXD026596 | Pride

Ramie Proteome

Effect of Fu Zheng Jie Du Formula on outcomes in patients with severe pneumonia receiving prone ventilation: a retrospective cohort study.

Not available

S-EPMC11303160 | biostudies-literature

Mutation Mapping of 31 Streptococcus suis strains

Identification of Genes and Genomic Islands Correlated with High Pathogenicity through Tilling Microarray-Based Comparative Genomics in S. suis. Streptococcus suis is an important zoonotic pathogen that can cause meningitis and sepsis in both pigs and humans. S. suis isolates have been categorized ...

ORGANISM(S): Streptococcus suis

2012-08-08 | E-GEOD-26052 | biostudies-arrayexpress

Gut microbiota production of trimethyl-5-aminovaleric acid reduces fatty acid oxidation and accelerates cardiac hypertrophy

Numerous studies found intestinal microbiota alterations which are thought to affect the development of various diseases through the production of gut-derived metabolites. However, the specific metabolites and their pathophysiological contribution to cardiac hypertrophy or heart failure progression ...

2021-12-08 | MTBLS3174 | MetaboLights

Enhancement of diepoxin ζ production by yeast extract and its fractions in liquid culture of Berkleasmium-like endophytic fungus Dzf12 from Dioscorea zingiberensis.

Not available

S-EPMC6259239 | biostudies-literature

Mutation Mapping of 40 Streptococcus suis strains

Streptococcus suis is an important zoonotic pathogen that can cause meningitis and sepsis in both pigs and humans. In this study,we evaluated the genetic difference of 40 Streptococcus suis strains belonging to various sequence types by comparative genomic hybridization to identify genes associated ...

ORGANISM(S): Streptococcus suis

2014-05-20 | E-GEOD-40035 | biostudies-arrayexpress

Associations between insomnia and cardiovascular diseases: a meta-review and meta-analysis of observational and Mendelian randomization studies.

Not available

S-EPMC11609828 | biostudies-literature

Ionizing radiation promotes lung injury by inducing ferroptosis-driven senescence in epithelial cells via NCOA4-mediated ferritinophagy

Not available

S-EPMC12945525 | biostudies-literature

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