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TranscriptomicsSmall RNAs from 4-week old seedling of Oryza sativa
In order to identify new miRNAs, NAT-siRNAs and possibly abiotic-stress regulated small RNAs in rice, three small RNA libraries were constructed from control rice seedlings and seedlings exposed to drought or salt stress, and then subjected to pyrosequencing. Totally three sets of small RNAs, which ...
ORGANISM(S): Oryza sativa 
2008-12-08 | E-GEOD-12317 | biostudies-arrayexpress
TranscriptomicsHigh-throughput RNA sequencing analysis of WT, rdm16-2 and sta1 mutants
Using Illumina paired-end RNA-seq technology to examine the genome-wide gene expression and intron-retention events in WT, rdm16-2 and sta1 RNA-seq analysis of 4-week-old leaves of WT, rdm16-2 and sta1 mutants
ORGANISM(S): Arabidopsis thaliana 
2013-02-26 | E-GEOD-44635 | biostudies-arrayexpress
TranscriptomicsGenome-wide profiling of small RNAs in rice under abiotic stresses
To identify novel miRNA and NAT-siRNAs that are associated with abiotic stresses in rice, we generated small RNA sequences from inflorescences from rice under control and under dought, salt, and cold stress treatments. Over 30 million reads were generated. sequencing of small RNAs in rice under cont...
ORGANISM(S): Oryza sativa 
2012-03-12 | E-GEOD-26357 | biostudies-arrayexpress
TranscriptomicsArabidopsis EDM2 Promotes IBM1 Distal Polyadenylation and Regulates Genome DNA Methylation Patterns [RNA-Seq]
A forward genetics screen led to the identification of the putative chromatin regulator EDM2 as a cellular anti-silencing factor and regulator of genome DNA methylation patterns. EDM2 contains a composite PHD finger domain that recognizes both active H3K4 and repressive H3K9 methylation marks at the...
ORGANISM(S): Arabidopsis thaliana 
2013-10-29 | E-GEOD-51763 | biostudies-arrayexpress
GenomicsWhole genome bisulfite sequencing of rdm16ros1, ros1, nrpd1ros1 mutants and C24 wild-type
Using whole genome bisulfite sequencing to provide single-base resulution of DNA methylation status in rdm16ros1, ros1, nrpd1ros1 mutants and examine the effect of RDM16 on DNA methylation 4 samples examined: C24 wild type with RD29A-LUC transgene, rdm16ros1 double mutant, ros1 mutant, nrpd1ros1 mut...
ORGANISM(S): Arabidopsis thaliana 
2013-09-27 | E-GEOD-44417 | biostudies-arrayexpress
UnknownThe functional spectrum of low-frequency coding variation.
Not available
S-EPMC3308047 | biostudies-literature
UnknownIntegrative annotation of variants from 1092 humans: application to cancer genomics.
Not available
S-EPMC3947637 | biostudies-literature
UnknownMapping copy number variation by population-scale genome sequencing.
Not available
S-EPMC3077050 | biostudies-literature
UnknownAn integrated map of genetic variation from 1,092 human genomes.
Not available
S-EPMC3498066 | biostudies-literature
UnknownThe 1000 Genomes Project: data management and community access.
Not available
S-EPMC3340611 | biostudies-literature
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