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TranscriptomicsEthanol stress response in Desulfovibrio vulgaris
Desulfovibrio vulgaris has been studied extensively for its potential in the bioremediation of heavy metals and radionuclides. Hydrocarbons and solvents, as frequent environmental co-contaminants, have been reported to inhibit microbial activities and thereby pose a limitation on bioremediation effi...
ORGANISM(S): Desulfovibrio vulgaris str. Hildenborough 
2010-06-24 | E-GEOD-7489 | biostudies-arrayexpress
TranscriptomicsAcetone stress response in Desulfovibrio vulgaris
Desulfovibrio vulgaris has been studied extensively for its potential in the bioremediation of heavy metals and radionuclides. Hydrocarbons and solvents, as frequent environmental co-contaminants, have been reported to inhibit microbial activities and thereby pose a limitation on bioremediation effi...
ORGANISM(S): Desulfovibrio vulgaris str. Hildenborough 
2009-08-08 | E-GEOD-5569 | biostudies-arrayexpress
TranscriptomicsTranscriptomic analysis of mature Desulfovibrio vulgaris biofilm
Background. Desulfovibrio vulgaris Hildenborough is a sulfate-reducing bacterium (SRB) that is intensively studied in the context of metal corrosion and heavy-metal bioremediation, and SRB populations are commonly observed in pipe and subsurface environments as surface-associated populations. In o...
ORGANISM(S): Desulfovibrio vulgaris str. Hildenborough 
2012-03-31 | E-GEOD-35883 | biostudies-arrayexpress
TranscriptomicsFunction of Periplasmic Hydrogenases in the Sulfate-Reducing Bacterium Desulfovibrio vulgaris Hildenborough
The sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough possesses four periplasmic hydrogenases to facilitate the oxidation of molecular hydrogen. These include an [Fe], a [NiFeSe] and two [NiFe] hydrogenases encoded by the hyd, hys, hyn1 and hyn2 genes, respectively. In order to underst...
ORGANISM(S): Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough 
2010-06-10 | E-GEOD-8137 | biostudies-arrayexpress
TranscriptomicsArchitecture of thermal adaptation in Exiguobacterium sibiricum strain 255-15: A genome and transcriptome approach
Several microorganisms have wide temperature growth range and versatility to tolerate large thermal fluctuations in diverse environments. To better understand thermal adaptation of psychrotrophs, Exiguobacterium sibiricum strain 255-15 was used, a psychrotrophic bacterium that grows from -5°C to 39...
ORGANISM(S): Exiguobacterium sibiricum 255-15 
2010-05-26 | E-GEOD-10133 | biostudies-arrayexpress
TranscriptomicsFunctional genomic analysis of three nitrogenase isozymes in the photosynthetic bacterium Rhodopseudomonas palustris
To address the question of how photosynthetic bacterium Rhodopseudomonas palustris differentially regulates gene expression of three nitrogenase isozymes (Mo, V, and Fe nitrogenases), we constructed Mo strain (Mo nitrogenase only strain), V strain (V nitrogenase only strain), and Fe strain (Fe nitro...
ORGANISM(S): Rhodopseudomonas palustris 
2010-06-30 | E-GEOD-3030 | biostudies-arrayexpress
MetabolomicsLegume rhizodeposition promotes nitrogen fixation by soil microbiota under crop diversification

Biological nitrogen fixation by free-living bacteria and rhizobial symbiosis with legumes plays a key role in sustainable crop production. Here, we study how different crop combinations influence the interaction between peanut plants and their rhizosphere microbiota via metabolite deposition and ...

2024-03-19 | MTBLS6537 | MetaboLights
ProteomicsEnergy sensor AMPK gamma regulates translation via phosphatase PPP6C independent of AMPK alpha
In this project, SILAC-based quantitative proteomics approach was applied for phosphoproteomics analysis. The light samples were treated with ddH2O as control group, and the medium samples labeled by 2D2 of lysine (K4) and 13C6 of arginine (R6) were treated with 2DG, while the heavy samples labeled ...
ORGANISM(S): Homo Sapiens 
2022-11-08 | PXD038034 |
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