Zhu An A - OmicsDI

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Unknown (40270)
Proteomics (1076)
Transcriptomics (750)
Metabolomics (186)
Genomics (148)
Models (17)
Multiomics (6)
Other (2)
Genomic (1)

Organisms

Homo sapiens (445)
Mus musculus (292)
Arabidopsis thaliana (66)
Saccharomyces cerevisiae (32)
Rattus norvegicus (24)
Plasmodium falciparum (21)
Oryza sativa (16)
Drosophila melanogaster (12)
Zea mays (12)
Viridiplantae (11)
Danio rerio (11)
Plasmodium falciparum 3D7 (9)
Schizosaccharomyces pombe (8)
Oryza sativa Japonica Group (8)
Sus scrofa (8)
Gossypium hirsutum (7)
Gallus gallus (6)
Macaca mulatta (6)
Oryza sativa Indica Group (4)
Populus trichocarpa (4)
Boehmeria nivea (3)
Bombyx mori (3)
synthetic construct (3)
Staphylococcus epidermidis (3)
Nicotiana tabacum (3)
Vibrio cholerae (3)
Caenorhabditis elegans (3)
Sorghum propinquum (2)
Hevea brasiliensis (2)
Mammalia (1)

Organisms

Mus musculus (13)
Plasmodium falciparum 3D7 (6)
Homo sapiens (6)
Plasmodium falciparum (4)
Setaria viridis (1)
Caenorhabditis elegans (1)
Arabidopsis thaliana (1)

Repository

biostudies-arrayexpress (840)
pride (728)
iProX (267)
MetaboLights (179)
MassIVE (44)
ENA (38)
BioModels (17)
EGA (17)
jPOST (13)
geo (8)
GNPS (6)
PeptideAtlas (6)
NODE (5)
PanoramaPublic (5)
PAXDB (5)
dbGaP (1)
GPMDB (1)

Tissue

Cell culture (164)
Epithelial cell (46)
Plant cell (43)
Leaf (41)
Liver (37)
Brain (35)
Whole body (20)
Testis (19)
Blood plasma (19)
Lung (16)
Blood serum (15)
Kidney (14)
Permanent cell line cell (12)
Oocyte (12)
Heart (12)
Root (11)
Hepatocyte (11)
Cell suspension culture (10)
Spleen (10)
Blood (9)
Skin (9)
Embryonic stem cell (9)
Blood cell (8)
Macrophage (8)
Midgut (7)
B cell (7)
Breast (5)
Cell line (3)
Others (3)
Liver S9 fraction (1)

Disease

Disease free (27)
Breast cancer (20)
Cervix carcinoma (8)
Liver cancer (7)
Lung cancer (7)
Cardiovascular system disease (6)
Wounds and Injuries (6)
Malignant neoplasm of ovary (5)
Alzheimer's disease (5)
Type 2 diabetes mellitus (5)
Acute leukemia (5)
Colon cancer (5)
Triple-receptor negative breast cancer (4)
Hepatocellular carcinoma (4)
Pancreatic ductal adenocarcinoma (4)
Non-alcoholic steatohepatitis (3)
Cerebrovascular disease (3)
Inflammation (3)
Brain glioblastoma multiforme (3)
Pancreatic cancer (3)
Cervical cancer (3)
Brain cancer (3)
Thyroid cancer (2)
Acute kidney tubular necrosis (2)
Non-small cell lung carcinoma (2)
Brain ischemia (2)
1dpi (1)
Carcinoma (1)
Normal (1)
Not Available (1)

Technology Type

Mass Spectrometry (728)
Shotgun proteomics (392)
Mass spectrometry (130)
Bottom-up proteomics (119)
Data-dependent acquisition (57)
Affinity purification coupled with mass spectrometry proteomics (55)
Gel-based experiment (47)
Data-independent acquisition (45)
Mass spectrometry assay (41)
Top-down proteomics (32)
SWATH MS (29)
SRM/MRM (14)
Chemical cross-linking coupled with mass spectrometry proteomics (10)
NMR spectroscopy (8)
DiaPASEF (5)
All-ion fragmentation (5)
MSE (4)
Mass spectrometry imaging (4)
Proteogenomics (2)
RNA mass spectrometry (2)
Affinity proteomics (2)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Metaproteomics (1)

Instrument Platform

Q Exactive (12)
Illumina HiSeq 2500 (9)
Orbitrap Fusion Lumos (9)
LTQ Orbitrap Elite (8)
Orbitrap Eclipse (5)
Illumina NovaSeq 6000 (4)
NextSeq 500 (4)
Illumina NovaSeq X (3)
Illumina HiSeq 2000 (3)
Other (2)
GenePix 4000B [Axon Instruments] (2)
Illumina HiSeq 4000 (2)
Orbitrap Exploris 480 (2)
Computer (1)
Beadarray reader (1)
Agilent Bioanalyzer (1)
Not applicable (1)
Qiacube (1)
454 GS FLX+ (1)
Illumina Genome Analyzer IIx (1)
NextSeq 2000 (1)
Illumina HiSeq 1000 (1)
MinION (1)
BGISEQ-500 (1)
HiSeq X Ten (1)
Illumina HiSeq 1500 (1)
NextSeq 550 (1)
GC/MS Agilent MSD5977B (1)
TripleTOF 5600+|1002584 (1)
Instrument (1)

Publication Date

2025 (206)
2022 (202)
2024 (158)
2023 (152)
2026 (150)
2013 (137)
2021 (135)
2014 (124)
2015 (112)
2012 (112)
2016 (90)
2010 (86)
2020 (85)
2011 (80)
2019 (77)
2018 (60)
2009 (41)
2017 (39)
2008 (33)
2007 (12)
2005 (9)
2006 (6)
2004 (5)
2002 (1)
2001 (1)

UNIPROT ID/AC

A0A078HAI2_BRANA (2)
A0A078ITY5_BRANA (2)
A0A078I499_BRANA (2)
A0A078H9K7_BRANA (2)
A0A078GWV1_BRANA (2)
A0A078GE38_BRANA (2)
A0A078GMV3_BRANA (2)
A0A078I6L6_BRANA (2)
A0A078G049_BRANA (2)
A0A078JAT9_BRANA (2)
A0A078GC19_BRANA (2)
A0A078H310_BRANA (2)
A0A078J1U3_BRANA (2)
A0A078JF97_BRANA (2)
A0A078I057_BRANA (2)
A0A078GAJ5_BRANA (2)
A0A078GTG5_BRANA (2)
A0A078FSI1_BRANA (2)
A0A078HBH9_BRANA (2)
A0A078GD41_BRANA (2)
A0A078G2G6_BRANA (2)
A0A078I4J7_BRANA (2)
A0A078FV69_BRANA (2)
A0A078H2Z1_BRANA (2)
A0A078J638_BRANA (2)
A0A078H7S5_BRANA (2)
A0A078GJX5_BRANA (2)
A0A078GWE3_BRANA (2)
A0A078H3Y8_BRANA (2)
A0A078FXL6_BRANA (2)

ENSEMBL ID

ENSG00000147251 (3)
ENSG00000247315 (3)
ENSG00000170477 (3)

CHEBI ID

CHEBI:15428 (37)
CHEBI:17992 (35)
CHEBI:16761 (21)
CHEBI:17659 (16)
CHEBI:16710 (10)
CHEBI:17050 (10)
CHEBI:16526 (9)
CHEBI:25523 (8)
CHEBI:16474 (8)
CHEBI:43474 (7)
CHEBI:15379 (7)
CHEBI:17363 (5)
CHEBI:15422 (5)
CHEBI:15965 (3)
CHEBI:17138 (3)
CHEBI:16905 (3)
CHEBI:22902 (2)
CHEBI:175901 (2)
CHEBI:17969 (2)
CHEBI:15713 (2)
CHEBI:15378 (2)
CHEBI:15721 (2)
CHEBI:15946 (2)
CHEBI:16108 (2)
CHEBI:87393 (1)
CHEBI:11424 (1)
CHEBI:40116 (1)
CHEBI:41330 (1)
CHEBI:1879 (1)
CHEBI:49019 (1)

Metabolite Name

Uridine (41)
Hypoxanthine (40)
Adenosine (39)
Adenine (36)
Inosine (35)
Taurine (34)
Uracil (33)
Creatine (33)
Guanosine (33)
Betaine (32)
Cytosine (30)
Xanthine (29)
Choline (29)
Xanthosine (28)
Riboflavin (27)
Creatinine (27)
L-Phenylalanine (26)
Guanine (26)
Cytidine (26)
Succinic acid (25)
L-Proline (25)
L-Histidine (24)
Palmitic acid (24)
Glycine (23)
L-Arginine (23)
Citric acid (23)
L-Tyrosine (22)
L-Tryptophan (22)
L-Carnitine (22)
Histamine (22)

First Public Date

2014 (13)
2025 (8)
2026 (5)
2020 (3)
2024 (2)
2019 (2)
2022 (1)
2021 (1)
2017 (1)
2015 (1)
2013 (1)

Modelling Approach

Ordinary differential equation model (14)
Machine learning (1)
Metabolic network (1)
Biochemical network (1)

Lab affiliation

State Key Laboratory of Veterinary Etiological Biology, Key Laboratory of Veterinary Parasitology of Gansu Province, Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Lanzhou, Gansu Province 730046, PR China (6)
Department of Entomology,Institute of Vegetables and Flowers,Chinese Academy of Agriculture Sciences,Beijing,100081,China (6)
Texas Tech University (6)
Northwest University (6)
Zhejiang University (6)
Peking University (5)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Science4Life, University of Utrecht, Padualaan 8, 3584 CH Utrecht, The Netherlands (4)
State Key Laboratory of Reproductive Medicine and Offspring Health, Nanjing Medical University, Nanjing 211166, China (4)
Shanghai Key Laboratory of Bioactive Small Molecules, Department of Physiology and Pathophysiology, School of Basic Medical Sciences, Fudan University Shanghai Medical College, Shanghai 200032, China. (4)
Department of Immunology, College of Basic Medical Science, China Medical University, Shenyang, Liaoning 110122, China (4)
Tianjin Medical University (4)
Department of Structural Biology, Leibniz-Forschungsinstitut für Molekulare Pharmakologie (FMP) (3)
University at buffalo, SUNY (3)
State Key Laboratory of Microbial Metabolism, Joint International Research Laboratory of Metabolic & Developmental Sciences, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, China. (3)
First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China (3)
Beijing proteome research center (3)
Department of Clinical Laboratory, Shanghai Tenth People’s Hospital of Tongji University, Shanghai, 200072, China (3)
The Drug Discovery Lab, Mary S. Easton Center for Alzheimer’s Disease Research, Department of Neurology, David Geffen School of Medicine, 710 Westwood Plaza, University of California Los Angeles, Los Angeles, CA 90095, USA (3)
University of Greifswald, Institute of Microbiology, Department of Microbial Physiology and Molecular Biology (3)
Westlake University (3)
Huazhong Agricultural University (3)
University of Florida (3)
National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, China (3)
College of Biomedical Engineering & Instrument Science, Zhejiang University (3)
Tongji University (3)
Human Phenome Institute,Zhangjiang FudanInternational Innovation Center, Fudan UniversityShanghai, 201203, China. (2)
Florida Research and Innovation Center, Cleveland Clinic, Port Saint Lucie, FL 34987, USA (2)
XiangYa hospital of Central south university (2)
School of Pharmacy, Lanzhou University, Lanzhou, China (2)
State Key Laboratory of Reproductive Medicine, Department of Histology and Embryology, Nanjing Medical University, Nanjing 211166, Jiangsu, China (2)

IsPrivate

False (17)

Submitter Keywords

Ersilia (1)
FAIR-AIML (1)
Machine Learning Model (1)
FROG (1)
Immuno-oncology (1)

Classification

protozoa (10)

Modification

6x(2)H labeled dimethylated L-arginine (2)
4x(2)H labeled dimethylated L-lysine (2)
2x(15)N labeled L-lysine (2)
79.966331 (1)
-17.026549 (1)
15.994915 (1)
N6 (1)
4 (1)
Not available (1)
4x(15)N labeled L-arginine (1)
57.021464 (1)
4-tetrahydrothiazine-3-carboxylic acid (1)

Study type

Transcription profiling by array (429)
RNA-seq of coding RNA (159)
ChIP-seq (55)
RNA-seq of non coding RNA (43)
Methylation profiling by high throughput sequencing (33)
Comparative genomic hybridization by array (23)
Other (22)
Methylation profiling by array (17)
Unknown experiment type (14)
Transcription profiling by RT-PCR (10)
Proteomic profiling by array (5)
ChIP-chip by tiling array (4)
Transcription profiling by tiling array (4)
ChIP-chip by array (4)
RNA-seq of coding RNA from single cells (4)
Transcription profiling by SAGE (2)
Genotyping by array (2)
MicroRNA profiling by array (2)
DNA-seq (2)
RNA-seq of total RNA (2)
MNase-seq (1)
Cell line - One-color microarray (1)
Animal - High-throughput sequencing (1)
MicroRNA profiling by high throughput sequencing (1)

Release Date

2022 (5538)
2025 (5474)
2023 (4942)
2024 (4694)
2021 (4202)
2020 (3061)
2019 (2302)
2018 (1958)
2017 (1700)
2016 (1532)
2015 (1232)
2014 (887)
2026 (742)
2013 (708)
2012 (579)
2011 (396)
2010 (340)
2009 (277)
2008 (188)
2007 (93)
2005 (67)
2006 (60)
2004 (44)
2003 (29)
2002 (16)
2000 (14)
2001 (11)
1999 (9)
1998 (6)
1997 (4)

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Comparison of lipidome profiles of Caenorhabditis elegans—results from an inter-laboratory ring trial

Introduction

Lipidomic profiling allows 100s if not 1000s of lipids in a sample to be detected and quantified. Modern lipidomics techniques are ultra-sensitive assays that enable the discovery of novel biomarkers in a variety of fields and provide new insight in mechanistic investigations. D...

2022-02-21 | MTBLS2016 | MetaboLights

Cell Membrane Remodeling Mediates Polymyxin B Resistance in Klebsiella pneumoniae: An Integrated Proteomics and Metabolomics Study

Polymyxin B (PB) is introduced into the clinic as the last-line therapy against carbapenem-resistant Klebsiella pneumoniae (CRKP). Unfortunately, increased resistance to PB in Klebsiella pneumoniae (K. pneumoniae) has threatened global health. Resistance of K. pneumoniae ...

2022-03-04 | MTBLS4132 | MetaboLights

Comprehensive Investigation into the Antioxidant Phytochem-icals and Molecular Mechanisms of the Genus Ottelia: An In-tegrated Metabolomic and Network Pharmacology Approach

Chemical composition analysis of Ottelia acuminata, Ottelia acuminata var. jingxiensis, Ottelia fengshanensis, Ottelia guanyangensis, and Ottelia alismoides

2026-04-27 | MTBLS14364 | MetaboLights

13C-glucose tracing analysis of IFN-treated A549 cells expressing wild-type SARS-CoV-2 Nsp3-4 or a deISGylation-defective Nsp3-4 mutant protein

Interferon (IFN)-stimulated gene 15 (ISG15) regulates diverse cellular processes, including antiviral immunity, through its conjugation to target proteins (ISGylation). Increasing evidence suggests that ISGylation can also reshape cellular metabolism; however, how viruses counteract ISGylation-me...

2026-05-05 | MTBLS14030 | MetaboLights

P. falciparum (lab strain DD2) treated with A23187 vs untreated [CGH]

Calcium is a universal second messenger molecule which plays a significant role in several biological processes. Presence of calcium sensors (calmodulins) and calcium-dependent protein kinases in Plasmodium species suggests an important role of calcium-dependent signaling pathways in the regulation ...

ORGANISM(S): Plasmodium falciparum

2012-07-14 | E-GEOD-33764 | biostudies-arrayexpress

P. falciparum (lab strain DD2) treated with ionomycin vs untreated [CGH]

ORGANISM(S): Plasmodium falciparum

2012-07-14 | E-GEOD-33605 | biostudies-arrayexpress

extracellular calcium chelation experiment_P. falciparum (lab strain 3d7) schizonts treated with ionomycin vs P. falciparum (lab strain 3d7) reference RNA pool

ORGANISM(S): Plasmodium falciparum 3D7

2012-07-14 | E-GEOD-33835 | biostudies-arrayexpress

P. falciparum (lab strain 3d7) schizonts treated with A23187 vs P. falciparum (lab strain 3d7) reference RNA pool

ORGANISM(S): Plasmodium falciparum 3D7

2012-07-14 | E-GEOD-33797 | biostudies-arrayexpress

extracellular calcium chelation experiment_P. falciparum (lab strain 3d7) schizonts treated with EGTA and ionomycin vs P. falciparum (lab strain 3d7) reference RNA pool

ORGANISM(S): Plasmodium falciparum 3D7

2012-07-14 | E-GEOD-33836 | biostudies-arrayexpress

Explore the lactation function of Protein phosphorylation sites in goat mammary tissues by phosphoproteome

Background: Protein phosphorylation plays an important role in lactation. Differentially modified phosphorylation sites between peak lactation (PL, 90 days postpartum) and late lactation (LL, 280 days postpartum) were investigated using an integrated approach, namely, liquid chromatography with tand...

ORGANISM(S): Capra hircus (Goat)

2022-02-17 | PXD026437 | Pride

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