Zhu J J - OmicsDI

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Unknown (49273)
Proteomics (1285)
Transcriptomics (348)
Metabolomics (123)
Genomics (84)
Models (11)
Multiomics (8)
Other (2)
Genomic (1)

Organisms

Homo sapiens (508)
Mus musculus (199)
Arabidopsis thaliana (29)
Plasmodium falciparum (20)
Rattus norvegicus (17)
Saccharomyces cerevisiae (16)
Zea mays (15)
Plasmodium falciparum 3D7 (9)
Viridiplantae (5)
Oryza sativa (5)
Drosophila melanogaster (4)
Danio rerio (4)
Macaca mulatta (4)
Schizosaccharomyces pombe (3)
Oryza sativa Japonica Group (3)
Bombyx mori (3)
Sus scrofa (3)
Pan troglodytes (2)
Capra hircus (2)
Spalax carmeli (1)
Larimichthys crocea (1)
Miniopterus schreibersii (1)
Nannospalax galili (1)
Pseudopodoces humilis (1)
Rhodococcus opacus (1)
Pteropus alecto (1)
Hevea brasiliensis (1)
human oral metagenome (1)
Bean pod mottle virus (1)
Thermus thermophilus HB8 (1)

Organisms

Plasmodium falciparum 3D7 (6)
Plasmodium falciparum (4)
Homo sapiens (2)
Mus musculus (2)
Danio rerio (1)

Repository

pride (709)
biostudies-arrayexpress (390)
iProX (335)
PeptideAtlas (163)
MetaboLights (116)
MassIVE (63)
EGA (26)
ENA (15)
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jPOST (9)
GNPS (7)
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geo (2)
PAXDB (2)
dbGaP (1)
GPMDB (1)

Tissue

Cell culture (159)
Digestive System (95)
Liver (44)
Epithelial cell (40)
Liver (40)
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Blood serum (17)
Blood plasma (17)
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Heart (12)
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Early embryonic cell (11)
Blood cell (11)
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Macrophage (10)
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Skin (9)
Root (9)
Spleen (9)
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Disease

Disease free (34)
Breast cancer (16)
Rectum adenocarcinoma (10)
Colon adenocarcinoma (10)
Colon cancer (8)
Acute leukemia (8)
Lung cancer (6)
Cervix carcinoma (6)
Liver cancer (6)
Lymphoma (5)
Cardiovascular system disease (5)
Brain cancer (5)
Type 2 diabetes mellitus (5)
Hepatocellular carcinoma (4)
Prostate adenocarcinoma (4)
Cervical cancer (4)
Alzheimer's disease (4)
Malignant neoplasm of ovary (4)
Wounds and Injuries (4)
Leukemia (3)
Non-alcoholic steatohepatitis (3)
Non-small cell lung carcinoma (3)
Brain glioblastoma multiforme (3)
Pancreatic cancer (3)
Thyroid cancer (2)
Acute kidney tubular necrosis (2)
Inflammation (2)
Brain ischemia (2)
Normal (1)
Not Available (1)

Technology Type

Mass Spectrometry (709)
Shotgun proteomics (369)
Bottom-up proteomics (118)
Mass spectrometry (98)
Gel-based experiment (57)
Affinity purification coupled with mass spectrometry proteomics (53)
Data-dependent acquisition (47)
Data-independent acquisition (41)
SWATH MS (30)
Top-down proteomics (27)
SRM/MRM (14)
Chemical cross-linking coupled with mass spectrometry proteomics (13)
Mass spectrometry assay (11)
NMR spectroscopy (7)
All-ion fragmentation (7)
Affinity proteomics (5)
MSE (5)
DiaPASEF (5)
Proteogenomics (4)
Olink affinity proteomics (2)
Mass spectrometry imaging (2)
RNA mass spectrometry (2)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
SomaScan affinity proteomics (1)
Metaproteomics (1)

Instrument Platform

LTQ Orbitrap Velos (109)
Q Exactive (10)
Orbitrap Fusion Lumos (10)
LTQ Orbitrap Elite (9)
LTQ (8)
Q Exactive Plus (7)
Orbitrap Eclipse (5)
Orbitrap Fusion (5)
Illumina HiSeq 2500 (3)
Q Exactive HF (3)
TripleTOF 5600 (3)
TimsTOF Pro (3)
Illumina Genome Analyzer IIx (2)
Illumina NovaSeq X (2)
HiSeq X Ten (2)
Illumina HiSeq 2000 (2)
TripleTOF 6600 (2)
Orbitrap Exploris 480 (2)
Computer (1)
GenePix 4000B [Axon Instruments] (1)
Illumina HiSeq 1500 (1)
NextSeq 550 (1)
NextSeq 500 (1)
GC/MS Agilent MSD5977B (1)
Instrument (1)
Q-Exactive HF-X (1)
TSQ Quantiva (1)
Q Exactive GC Orbitrap (1)
Impact (1)
SolariX (1)

Publication Date

2022 (186)
2025 (165)
2014 (147)
2021 (122)
2023 (114)
2024 (111)
2026 (100)
2020 (84)
2019 (77)
2013 (76)
2015 (66)
2018 (58)
2012 (54)
2010 (44)
2016 (37)
2017 (35)
2011 (34)
2009 (24)
2008 (17)
2007 (8)
2006 (5)
2004 (5)
2005 (4)
2002 (3)
2001 (1)

UNIPROT ID/AC

A0A078FU03_BRANA (1)
A0A078HV77_BRANA (1)
A0A078HJW2_BRANA (1)
A0A078F3D4_BRANA (1)
A0A078J602_BRANA (1)
A0A078JZW8_BRANA (1)
A0A078JTX0_BRANA (1)
A0A078III4_BRANA (1)
A0A078GPJ0_BRANA (1)
A0A078GXK7_BRANA (1)
A0A078HWX6_BRANA (1)
A0A078GQZ5_BRANA (1)
A0A078HQH4_BRANA (1)
A0A078G765_BRANA (1)
A0A078HHU3_BRANA (1)
A0A078GA61_BRANA (1)
A0A078IYH6_BRANA (1)
A0A078IP03_BRANA (1)
A0A078JZ28_BRANA (1)
A0A078J7J8_BRANA (1)
A0A078I240_BRANA (1)
A0A078GRV4_BRANA (1)
A0A078HUL6_BRANA (1)
A0A078GLP5_BRANA (1)
A0A078GXU8_BRANA (1)
A0A078GHB2_BRANA (1)
A0A078IJE1_BRANA (1)
A0A078GAQ0_BRANA (1)
A0A078FP04_BRANA (1)
A0A078INI1_BRANA (1)

ENSEMBL ID

ENSG00000170477 (102)
ENSG00000229353 (47)
ENSG00000147251 (22)
ENSG00000247315 (4)
ENSG00000176092 (2)

CHEBI ID

CHEBI:15428 (32)
CHEBI:16761 (14)
CHEBI:25523 (5)
CHEBI:16474 (5)
CHEBI:16526 (5)
CHEBI:16710 (4)
CHEBI:17050 (4)
CHEBI:15379 (4)
CHEBI:43474 (3)
CHEBI:175901 (2)
CHEBI:144829 (2)
CHEBI:16905 (2)
CHEBI:15721 (2)
CHEBI:17969 (2)
CHEBI:15422 (2)
CHEBI:87393 (1)
CHEBI:11424 (1)
CHEBI:40116 (1)
CHEBI:41330 (1)
CHEBI:1879 (1)
CHEBI:49019 (1)
CHEBI:49017 (1)
CHEBI:28831 (1)
CHEBI:17153 (1)
CHEBI:87426 (1)
CHEBI:86055 (1)
CHEBI:87430 (1)
CHEBI:87510 (1)
CHEBI:88764 (1)
CHEBI:52649 (1)

Metabolite Name

Uridine (26)
Hypoxanthine (24)
Adenosine (22)
Uracil (21)
Taurine (21)
Adenine (21)
Betaine (20)
Creatinine (19)
Creatine (19)
Choline (18)
Xanthine (18)
Inosine (18)
L-Arginine (17)
Palmitic acid (17)
Cytosine (16)
Glycine (16)
Guanosine (16)
Leucine (15)
Alanine (15)
Guanine (15)
Ornithine (15)
Citrulline (15)
Glutamine (15)
Citric acid (15)
Valine (14)
L-Proline (14)
L-Histidine (14)
L-Tyrosine (14)
Succinic acid (14)
Uric acid (14)

First Public Date

2014 (12)
2026 (1)
2020 (1)
2018 (1)

Modelling Approach

Ordinary differential equation model (10)
Metabolic network (1)

Lab affiliation

Vanderbilt University (10)
Northwest University (7)
He JunJun (5)
SIMM (4)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Science4Life, University of Utrecht, Padualaan 8, 3584 CH Utrecht, The Netherlands (4)
Zhejiang University (4)
XiangYa hospital of Central south university (3)
State Key Laboratory of Oncology in South China, Collaborative Innovation Center for Cancer Medicine, Guangdong Key Laboratory of Nasopharyngeal Carcinoma Diagnosis and Therapy, Sun Yat-sen University Cancer Center, Guangzhou 510060, China (3)
University at buffalo, SUNY (3)
State Key Laboratory of Microbial Metabolism, Joint International Research Laboratory of Metabolic & Developmental Sciences, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, China. (3)
Shandong Normal University (3)
The Drug Discovery Lab, Mary S. Easton Center for Alzheimer’s Disease Research, Department of Neurology, David Geffen School of Medicine, 710 Westwood Plaza, University of California Los Angeles, Los Angeles, CA 90095, USA (3)
State Key Laboratory of Reproductive Medicine and Offspring Health, Nanjing Medical University, Nanjing 211166, China (3)
Shanghai Institute of Materia Medica, Chinese Academy of Sciences (3)
Westlake University (3)
College of Biomedical Engineering & Instrument Science, Zhejiang University (3)
Department of Immunology, College of Basic Medical Science, China Medical University, Shenyang, Liaoning 110122, China (3)
Texas Tech University (3)
ETH Zurich (3)
Umea University (3)
Shanghaitech University (3)
Tianjin Medical University (3)
Pacific Northwest National Laboratory (3)
Department of Structural Biology, Leibniz-Forschungsinstitut für Molekulare Pharmakologie (FMP) (2)
Shanghai Tenth People's Hospital, Tongji University School of Medicine (2)
Institute of Genetics & Developmental Biology, Chinese Academy of Sciences (2)
Human Phenome Institute,Zhangjiang FudanInternational Innovation Center, Fudan UniversityShanghai, 201203, China. (2)
Hainan Normal University (2)
State Key Laboratory of Reproductive Medicine, Department of Histology and Embryology, Nanjing Medical University, Nanjing 211166, Jiangsu, China (2)
School of Pharmacy, Lanzhou University, Lanzhou, China (2)

IsPrivate

False (11)

Submitter Keywords

Immuno-oncology (2)
FROG (1)

Classification

protozoa (10)

Modification

6x(2)H labeled dimethylated L-arginine (2)
2x(15)N labeled L-lysine (2)
N6 (1)
4 (1)
4x(15)N labeled L-arginine (1)
4-tetrahydrothiazine-3-carboxylic acid (1)
Not available (1)

Study type

Transcription profiling by array (192)
RNA-seq of coding RNA (84)
ChIP-seq (27)
Methylation profiling by high throughput sequencing (14)
RNA-seq of non coding RNA (11)
Unknown experiment type (10)
Comparative genomic hybridization by array (9)
Other (8)
Methylation profiling by array (8)
Transcription profiling by RT-PCR (5)
ChIP-chip by array (4)
RNA-seq of coding RNA from single cells (4)
Transcription profiling by tiling array (3)
MicroRNA profiling by array (3)
Genotyping by array (2)
DNA-seq (2)
Transcription profiling by SAGE (1)
ChIP-chip by tiling array (1)
Animal - High-throughput sequencing (1)
Proteomic profiling by array (1)

Release Date

2025 (7883)
2022 (6854)
2023 (6003)
2024 (5983)
2021 (5103)
2020 (3660)
2019 (2712)
2018 (2221)
2017 (1897)
2016 (1627)
2015 (1263)
2026 (1127)
2014 (936)
2013 (645)
2012 (501)
2011 (329)
2010 (278)
2009 (226)
2008 (148)
2007 (74)
2006 (58)
2005 (41)
2004 (36)
2003 (21)
2002 (16)
2000 (9)
2001 (6)
1999 (2)
1998 (2)
1997 (1)

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Structural polymorphism in the promoter of pfmrp2 confers tolerance to mefloquine and chloroquine in Plasmodium falciparum [CGH]

Drug resistance in Plasmodium falciparum remains a challenge for the malaria eradication programs around the world. With the emergence of artemisinin resistance, the efficacy of the partner drugs in the artemisinin combination therapies (ACT) that include quinoline based drugs is becoming critical. ...

ORGANISM(S): Plasmodium falciparum

2013-02-07 | E-GEOD-44128 | biostudies-arrayexpress

P. falciparum (lab strain DD2) treated with ionomycin vs untreated [CGH]

Calcium is a universal second messenger molecule which plays a significant role in several biological processes. Presence of calcium sensors (calmodulins) and calcium-dependent protein kinases in Plasmodium species suggests an important role of calcium-dependent signaling pathways in the regulation ...

ORGANISM(S): Plasmodium falciparum

2012-07-14 | E-GEOD-33605 | biostudies-arrayexpress

P. falciparum (lab strain DD2) treated with A23187 vs untreated [CGH]

ORGANISM(S): Plasmodium falciparum

2012-07-14 | E-GEOD-33764 | biostudies-arrayexpress

P. falciparum (lab strain 3d7) schizonts untreated control vs P. falciparum (lab strain 3d7) reference RNA pool