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ProteomicsSWATH-MS quantitative analysis of proteins in the rice inferior and superior spikelets during grain filling
Modern rice cultivars have large panicle, however, yield potential of these cultivars is often not fully achieved due to the poor grain-filling of their late-flowering inferior spikelets (IS). Our earlier work suggests broad transcriptional reprogramming during grain filling and shows a difference i...
ORGANISM(S): Oryza sativa (Rice) 
2017-07-03 | PXD005401 | Pride
Proteomics Swath-ms analysis Grain filling Rice. Post-transcriptional regulation 
TranscriptomicsGene expression data from Arabidopsis C24 wild-type and ros1-1 seedlings.
We carried out a microarray experiment by using Affymetrix Arabidopsis ATH1 Genechips in order to identify genes that show reduced expression in ros1-1 plants. 2 samples examined: C24 wild-type and ros1-1 mutant (in C24 background).
ORGANISM(S): Arabidopsis thaliana 
2013-11-23 | E-GEOD-52669 | biostudies-arrayexpress
ProteomicsProteogenomic analysis of rice hypoxic germination
Post-transcriptional mechanisms, including alternative splicing (AS) and alternative translation initiation (ATI), have been used to explain the protein diversity involved in plant developmental processes and stress responses. Rice germination under hypoxia conditions is a classical model system for...
ORGANISM(S): Oryza sativa (Rice) 
2019-11-12 | PXD010923 | Pride
Oryza sativa Proteogenomics Splicing factor Alternative splicing Hypoxia Seed germination Translation initiation 
UnknownNotch-1 suppressed vascular dementia via modulating AMPK/mTOR/TFEB/YAP signaling induced ferroptosis.
Not available
S-EPMC12903360 | biostudies-literature
TranscriptomicsAn PWI- and RRM Motif-Containing Protein Is Critical for Pre-mRNA Splicing and ABA Responses in Arabidopsis
We used RNA-seq platform to determine role of a splicing factor RBM25 in regulation of gene expression and pre-mRNA splicing. We found that a loss-of-function allele of RBM25, rbm25-1, causes up- and down-regulation of a large number of genes. We further found that the rbm25-1 mutation results in d...
ORGANISM(S): Arabidopsis thaliana 
2015-10-28 | E-GEOD-66737 | biostudies-arrayexpress
TranscriptomicsThe rsa1-1 mutation affects global gene expression in Arabidopsis thaliana with or without salt stress
Salt stress is one of the most severe environmental conditions which cause huge losses in crop production worldwide. We identified a novel calcium-binding protein and used the Affymetrix whole-genome arrays to define downstream targets of this important protein. We used the microarrays to reveal the...
ORGANISM(S): Arabidopsis thaliana 
2013-07-07 | E-GEOD-39236 | biostudies-arrayexpress
UnknownNeoadjuvant Chemoradiotherapy Followed by Surgery Versus Surgery Alone for Locally Advanced Squamous Cell Carcinoma of the Esophagus (NEOCRTEC5010): A Phase III Multicenter, Randomized, Open-Label Clinical Trial.
Not available
S-EPMC6145832 | biostudies-literature
TranscriptomicsThe rsa3-1 mutation affects global gene expression in Arabidopsis thaliana under salt stress.
Salt stress is one of the most severe environmental conditions which cause huge losses in crop production worldwide. We identified an essential regulator of salt stress RSA3 and used the Affymetrix whole-genome arrays to study the effect of rsa3-1 mutation on global gene expression under salt stress...
ORGANISM(S): Arabidopsis thaliana 
2013-04-20 | E-GEOD-41626 | biostudies-arrayexpress
TranscriptomicsThe rcf1-1 mutation affects global gene expression in Arabidopsis thaliana with or without cold stress.
Cold stress is one of the most severe environmental conditions which cause huge losses in crop production worldwide. We identified an essential regulator of cold-responsive genes and used the Affymetrix whole-genome arrays to define downstream targets of this important protein. We used the microarra...
ORGANISM(S): Arabidopsis thaliana 
2013-02-25 | E-GEOD-39090 | biostudies-arrayexpress
TranscriptomicsGenome-wide identification of mis-spliced/intron-retained transcripts in Arabidopsis thaliana rcf1-1 mutant plants under normal growth conditions as determined by tiling array analysis.
Cold stress is one of the most severe environmental conditions which cause huge losses in crop production worldwide. We identified a DEAD box RNA helicase, RCF1 (Regulator of CBF gene expression 1) that controls pre-mRNA splicing of cold-stress-responsive genes including positive and negative regula...
ORGANISM(S): Arabidopsis thaliana 
2013-02-25 | E-GEOD-41377 | biostudies-arrayexpress
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