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TranscriptomicsA genomic approach to bud mutation in sweet orange (Citrus sinensis L. Osbeck) fruit
Bud mutations arise often in citrus. The selection of mutants is one of the most important breeding methods in citrus. However, the molecular bases of bud mutation have rarely been studied. To identify the potential important or novel genes involved in bud mutation, different transcriptomic techniqu...
ORGANISM(S): Citrus sinensis 
2009-03-09 | E-GEOD-10729 | biostudies-arrayexpress
UnknownIdentification of a key locus, qRL8.1, associated with root length traits during seed germination under salt stress via a genome-wide association study in rice.
Not available
S-EPMC11881369 | biostudies-literature
MetabolomicsMicrobiome and metabolome features in inflammatory bowel disease via multi-omics integration analyses across cohorts

The perturbations of the gut microbiota and metabolites are closely associated with the progression of inflammatory bowel disease (IBD). However, inconsistent findings across studies impede a comprehensive understanding of their roles in IBD and their potential as reliable diagnostic biomarkers. ...

2026-01-28 | MTBLS8713 | MetaboLights
UnknownMacrophage PTEN controls STING-induced inflammation and necroptosis through NICD/NRF2 signaling in APAP-induced liver injury.
Not available
S-EPMC10294406 | biostudies-literature
ProteomicsTMT-proteomics of AUF1 knockdown in HepG2 cell
HepG2 cells is knockdown with siAUF1 or siNC, total cellular proteins were extracted with SDT buffer and quantified. The protein samples underwent FASH enzymatic digestion and TMT labeling, followed by liquid chromatography-tandem mass spectrometry (LC-MS/MS) analysis.
ORGANISM(S): Homo Sapiens 
2024-01-24 | PXD048822 |
UnknownOptimization and applications of an in vivo bioluminescence imaging model of influenza A virus infections.
Not available
S-EPMC10436047 | biostudies-literature
TranscriptomicsMicroRNA-674-5p/5-LO axis is important in concanavalin A-induced acute mouse liver injury
Eight-week-old male pathogen-free BALB/c mice were used for the induction of concanavalin A (Con A)-induced hepatitis. Animals were acclimated for at least 6-7 days to a 12-hour light/dark cycle in a humidity- and temperature-controlled, specific-pathogen-free environment in autoclaved cages. Mice w...
ORGANISM(S): Mus musculus 
2016-06-27 | E-GEOD-76345 | biostudies-arrayexpress
ProteomicsUrinary proteomics of bladder cancer
LC-MS/MS was used to perform proteomic analysis of preoperative and postoperative urine samples of patients with bladder cancer
ORGANISM(S): Homo Sapiens 
2018-11-29 | PXD011871 |
TranscriptomicsGenome-wide temporal-spatial gene expression profiling of drought responsiveness in rice
Rice is highly sensitive to drought, and the effect of drought may vary with the different genotypes and development stages. Genome-wide gene expression profiling was used as the initial point to dissect molecular genetic mechanism of this complex trait and provide valuable information for the impro...
ORGANISM(S): Oryza sativa 
2010-12-23 | E-GEOD-26280 | biostudies-arrayexpress
ProteomicsActivation of GPCR ligand binding genes revealed through degradation of RNA polymerase II
RNA polymerase II drives mRNA gene expression, yet our understanding of global Pol II repression is limited. Using auxin-inducible degron, we degraded Pol II's RPB1 subunit in mESCs, resulting in global repression, yet certain genes exhibited increased RNA levels post-degradation. These genes are as...
ORGANISM(S): Mus Musculus 
PXD048023 |
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