Zhu Zhu Z - OmicsDI

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Unknown (32725)
Proteomics (1165)
Transcriptomics (195)
Metabolomics (163)
Genomics (56)
Models (3)
Multiomics (3)

Organisms

Homo sapiens (372)
Mus musculus (114)
Arabidopsis thaliana (28)
Plasmodium falciparum (20)
Saccharomyces cerevisiae (11)
Plasmodium falciparum 3D7 (9)
Zea mays (9)
Rattus norvegicus (9)
Oryza sativa (7)
Schizosaccharomyces pombe (6)
Danio rerio (6)
Oryza sativa Japonica Group (4)
Bombyx mori (3)
Macaca mulatta (3)
synthetic construct (2)
Triticum aestivum (2)
Sus scrofa (2)
Spalax carmeli (1)
Larimichthys crocea (1)
Miniopterus schreibersii (1)
Nannospalax galili (1)
Camellia sinensis (1)
Sorghum propinquum (1)
Pseudopodoces humilis (1)
Rhodococcus opacus (1)
Pteropus alecto (1)
Hevea brasiliensis (1)
Arabidopsis (1)
Vigna unguiculata (1)
Glycine soja (1)

Organisms

Plasmodium falciparum 3D7 (6)
Plasmodium falciparum (4)
Mus musculus (1)

Repository

pride (679)
iProX (275)
biostudies-arrayexpress (224)
PeptideAtlas (172)
MetaboLights (161)
MassIVE (25)
EGA (15)
ENA (12)
PAXDB (5)
NODE (4)
BioModels (3)
jPOST (3)
GNPS (2)
geo (1)
PanoramaPublic (1)

Tissue

Cell culture (154)
Digestive System (95)
Liver (44)
Epithelial cell (39)
Brain (38)
Plant cell (36)
Leaf (35)
Liver (26)
Lung (17)
Testis (16)
Permanent cell line cell (15)
Blood serum (15)
Kidney (15)
Whole body (15)
Blood plasma (14)
Plasma Non-glyco (13)
Heart (12)
Colonic cancer cell (11)
Root (11)
Hepatocyte (11)
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Oocyte (10)
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Embryo (10)
Blood cell (9)
Cell suspension culture (9)
Skin (8)
Others (6)
Breast (4)
Cell line (3)

Disease

Disease free (25)
Breast cancer (16)
Rectum adenocarcinoma (10)
Colon adenocarcinoma (10)
Type 2 diabetes mellitus (8)
Cardiovascular system disease (6)
Cervix carcinoma (6)
Acute leukemia (6)
Colon cancer (6)
Brain glioblastoma multiforme (5)
Malignant neoplasm of ovary (5)
Prostate adenocarcinoma (5)
Alzheimer's disease (5)
Lung cancer (5)
Triple-receptor negative breast cancer (4)
Liver cancer (4)
Pancreatic ductal adenocarcinoma (4)
Brain cancer (4)
Non-alcoholic steatohepatitis (3)
Cerebrovascular disease (3)
Cervical cancer (3)
Wounds and Injuries (3)
Acute kidney tubular necrosis (2)
Inflammation (2)
Non-small cell lung carcinoma (2)
Brain ischemia (2)
Melanoma (2)
Hepatocellular carcinoma (2)
Stomach carcinoma (2)
Normal (1)

Technology Type

Mass Spectrometry (679)
Shotgun proteomics (344)
Bottom-up proteomics (122)
Mass spectrometry (119)
Data-dependent acquisition (63)
Data-independent acquisition (48)
Affinity purification coupled with mass spectrometry proteomics (44)
Gel-based experiment (43)
Mass spectrometry assay (38)
SWATH MS (24)
Top-down proteomics (23)
SRM/MRM (12)
Chemical cross-linking coupled with mass spectrometry proteomics (12)
MSE (7)
All-ion fragmentation (7)
DiaPASEF (5)
NMR spectroscopy (4)
Proteogenomics (4)
Affinity proteomics (4)
Mass spectrometry imaging (3)
Olink affinity proteomics (2)
RNA mass spectrometry (2)
NextSeq 550, ILLUMINA (1)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
SomaScan affinity proteomics (1)
Metaproteomics (1)

Instrument Platform

LTQ Orbitrap Velos (119)
Liquid Chromatography MS - positive - reverse phase (59)
Liquid Chromatography MS - negative - reverse phase (51)
Liquid Chromatography MS - positive - hilic (18)
Liquid Chromatography MS - positive - reverse-phase (17)
Liquid Chromatography MS - negative - reverse-phase (17)
Liquid Chromatography MS - negative - hilic (15)
Gas Chromatography MS - positive (10)
Gas Chromatography MS - (5)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (5)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (5)
Bruker (4)
Liquid Chromatography MS - negative (4)
Liquid Chromatography MS - positive (4)
Orbitrap Fusion Lumos (3)
LTQ Orbitrap Elite (3)
Liquid Chromatography MS - alternating - reverse phase (3)
Liquid Chromatography MS - (3)
Illumina NovaSeq X (2)
HiSeq X Ten (2)
TripleTOF 6600 (2)
Q Exactive HF (2)
Orbitrap Eclipse (2)
Q Exactive (2)
Illumina Genome Analyzer IIx (1)
Illumina NovaSeq 6000 (1)
Illumina HiSeq 2000 (1)
Q-Exactive HF-X (1)
TripleTOF 5600 (1)
Q Exactive Plus (1)

Publication Date

2025 (187)
2022 (158)
2026 (131)
2014 (126)
2023 (113)
2021 (109)
2024 (89)
2020 (70)
2015 (61)
2019 (60)
2018 (53)
2013 (40)
2012 (34)
2016 (28)
2017 (27)
2011 (26)
2010 (21)
2008 (7)
2009 (6)
2004 (6)
2007 (3)
2005 (3)
2006 (2)
2002 (1)
2001 (1)

UNIPROT ID/AC

A0A078HAI2_BRANA (2)
A0A078ITY5_BRANA (2)
A0A078I499_BRANA (2)
A0A078H9K7_BRANA (2)
A0A078GWV1_BRANA (2)
A0A078GE38_BRANA (2)
A0A078GMV3_BRANA (2)
A0A078I6L6_BRANA (2)
A0A078G049_BRANA (2)
A0A078JAT9_BRANA (2)
A0A078GC19_BRANA (2)
A0A078H310_BRANA (2)
A0A078J1U3_BRANA (2)
A0A078JF97_BRANA (2)
A0A078I057_BRANA (2)
A0A078GAJ5_BRANA (2)
A0A078GTG5_BRANA (2)
A0A078FSI1_BRANA (2)
A0A078HBH9_BRANA (2)
A0A078GD41_BRANA (2)
A0A078G2G6_BRANA (2)
A0A078I4J7_BRANA (2)
A0A078FV69_BRANA (2)
A0A078H2Z1_BRANA (2)
A0A078J638_BRANA (2)
A0A078H7S5_BRANA (2)
A0A078GJX5_BRANA (2)
A0A078GWE3_BRANA (2)
A0A078H3Y8_BRANA (2)
A0A078FXL6_BRANA (2)

ENSEMBL ID

ENSG00000170477 (113)
ENSG00000229353 (47)
ENSG00000147251 (25)
ENSG00000247315 (4)
ENSG00000176092 (2)

CHEBI ID

CHEBI:30769 (40)
CHEBI:16335 (40)
CHEBI:16704 (39)
CHEBI:17596 (39)
CHEBI:17351 (36)
CHEBI:15756 (35)
CHEBI:17368 (35)
CHEBI:17568 (33)
CHEBI:16828 (33)
CHEBI:16750 (33)
CHEBI:16015 (32)
CHEBI:15891 (32)
CHEBI:15428 (31)
CHEBI:17895 (31)
CHEBI:17295 (31)
CHEBI:15741 (31)
CHEBI:16708 (31)
CHEBI:28875 (30)
CHEBI:17992 (30)
CHEBI:30805 (30)
CHEBI:16040 (30)
CHEBI:16027 (29)
CHEBI:28716 (29)
CHEBI:15971 (29)
CHEBI:17562 (29)
CHEBI:17750 (28)
CHEBI:30915 (28)
CHEBI:16196 (28)
CHEBI:7916 (28)
CHEBI:17203 (27)

Metabolite Name

Adenosine (37)
Uridine (37)
Hypoxanthine (35)
Adenine (34)
Guanosine (31)
Inosine (31)
Creatine (30)
Uracil (28)
Riboflavin (28)
Cytosine (28)
Taurine (28)
Betaine (26)
Xanthosine (26)
Cytidine (25)
Xanthine (25)
L-Phenylalanine (24)
Guanine (24)
L-Histidine (23)
Palmitic acid (23)
L-Proline (23)
Histamine (22)
Choline (22)
Creatinine (22)
Succinic acid (22)
Glycine (21)
L-Tyrosine (21)
L-Tryptophan (21)
Citric acid (21)
L-Arginine (20)
Deoxyinosine (20)

First Public Date

2014 (10)
2021 (1)
2020 (1)

Modelling Approach

Constraint-based model (3)

Lab affiliation

School of Life Sciences, Central China Normal University, Wuhan, Hubei province, China (14)
Vanderbilt University (10)
First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China (5)
State Key Laboratory of Veterinary Etiological Biology, Key Laboratory of Veterinary Parasitology of Gansu Province, Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Lanzhou, Gansu Province 730046, PR China (5)
Texas Tech University (5)
Northwest University (5)
SIMM (4)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Science4Life, University of Utrecht, Padualaan 8, 3584 CH Utrecht, The Netherlands (4)
State Key Laboratory of Reproductive Medicine and Offspring Health, Nanjing Medical University, Nanjing 211166, China (4)
Shanghai Key Laboratory of Bioactive Small Molecules, Department of Physiology and Pathophysiology, School of Basic Medical Sciences, Fudan University Shanghai Medical College, Shanghai 200032, China. (4)
Tianjin Medical University (4)
State Key Laboratory of Oncology in South China, Collaborative Innovation Center for Cancer Medicine, Guangdong Key Laboratory of Nasopharyngeal Carcinoma Diagnosis and Therapy, Sun Yat-sen University Cancer Center, Guangzhou 510060, China (3)
University at buffalo, SUNY (3)
State Key Laboratory of Microbial Metabolism, Joint International Research Laboratory of Metabolic & Developmental Sciences, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, China. (3)
Shandong Normal University (3)
The Drug Discovery Lab, Mary S. Easton Center for Alzheimer’s Disease Research, Department of Neurology, David Geffen School of Medicine, 710 Westwood Plaza, University of California Los Angeles, Los Angeles, CA 90095, USA (3)
University of Greifswald, Institute of Microbiology, Department of Microbial Physiology and Molecular Biology (3)
Westlake University (3)
Huazhong Agricultural University (3)
Department of Immunology, College of Basic Medical Science, China Medical University, Shenyang, Liaoning 110122, China (3)
Tongji University (3)
Shanghaitech University (3)
Zhejiang University (3)
Institute of Genetics & Developmental Biology, Chinese Academy of Sciences (2)
Florida Research and Innovation Center, Cleveland Clinic, Port Saint Lucie, FL 34987, USA (2)
XiangYa hospital of Central south university (2)
School of Pharmacy, Lanzhou University, Lanzhou, China (2)
Division of Life Science, The Hong Kong University of Science and Technology, Hong Kong SAR, China (2)
tsinghua university (2)
Division of Nephrology, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology (2)

IsPrivate

False (3)

Classification

protozoa (10)

Modification

6x(2)H labeled dimethylated L-arginine (2)
4x(2)H labeled dimethylated L-lysine (2)
Not available (2)
79.966331 (1)
-17.026549 (1)
15.994915 (1)
N6 (1)
57.021464 (1)
4-tetrahydrothiazine-3-carboxylic acid (1)

Study type

Transcription profiling by array (97)
RNA-seq of coding RNA (60)
ChIP-seq (20)
Comparative genomic hybridization by array (9)
RNA-seq of non coding RNA (9)
Methylation profiling by high throughput sequencing (8)
Other (4)
ChIP-chip by array (3)
Unknown experiment type (2)
Transcription profiling by tiling array (2)
Genotyping by array (2)
Methylation profiling by array (2)
RNA-seq of coding RNA from single cells (2)
ChIP-chip by tiling array (1)
Animal - High-throughput sequencing (1)
DNA-seq (1)
Proteomic profiling by array (1)

Release Date

2025 (5782)
2022 (4712)
2023 (4169)
2024 (4149)
2021 (3421)
2020 (2347)
2019 (1699)
2018 (1325)
2017 (1115)
2016 (933)
2026 (817)
2015 (765)
2014 (534)
2013 (367)
2012 (265)
2011 (170)
2010 (112)
2009 (93)
2008 (58)
2007 (40)
2006 (27)
2005 (17)
2004 (11)
2002 (8)
2003 (6)
2001 (4)
1999 (2)
2000 (1)

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P. falciparum (lab strain DD2) treated with ionomycin vs untreated [CGH]

Calcium is a universal second messenger molecule which plays a significant role in several biological processes. Presence of calcium sensors (calmodulins) and calcium-dependent protein kinases in Plasmodium species suggests an important role of calcium-dependent signaling pathways in the regulation ...

ORGANISM(S): Plasmodium falciparum

2012-07-14 | E-GEOD-33605 | biostudies-arrayexpress

P. falciparum (lab strain DD2) treated with A23187 vs untreated [CGH]

ORGANISM(S): Plasmodium falciparum

2012-07-14 | E-GEOD-33764 | biostudies-arrayexpress

P. falciparum (lab strain 3d7) schizonts untreated control vs P. falciparum (lab strain 3d7) reference RNA pool