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TranscriptomicsYeast X-Chromosome Associated Protein 5 (Xap5) Functions with H2A.Z to Suppress Aberrant Transcripts [ChIP-chip]
Comparison of occupancy profiling of Xap5 and H2A.Z/Pht1 in fission yeast. Agilent 60mer array was used to analyze DNA recovered by chromatin immunoprecipitation of Xap5 from fission yeast culture.
ORGANISM(S): Schizosaccharomyces pombe 
2014-07-01 | E-GEOD-46505 | biostudies-arrayexpress
TranscriptomicsYeast X-Chromosome Associated Protein 5 (Xap5) Functions with H2A.Z to Suppress Aberrant Transcripts [RNA-seq]
Functional characterization of the Xap5 protein using epistatic genetic interaction analysis (E-MAP), RNA-seq and ChIP-chip along with other growth experiments. wild type and mutant cells were grown at 37C in EMM50 and RNA was extracted from exponentially growing cells. Strand specific libraries wer...
ORGANISM(S): Schizosaccharomyces pombe 
2014-07-01 | E-GEOD-46382 | biostudies-arrayexpress
TranscriptomicsHistone H2A.Z cooperates with RNAi and heterochromatin factors to suppress antisense RNAs
Expression profile of mutant cells compared to wild-type cells: Expression profile of Schizosaccharomyces pombe genome in ∆pht1, ∆ago1, ∆clr4, rik1, ∆pht1rik1, ∆pht1∆ago1 and ∆pht1∆clr4 cells. Expression profile of Schizosaccharomyces pombe genome in ∆rrp6, ∆cid14, ∆swi6, ∆swr1, ∆set1, ∆pht1∆swi6 ...
ORGANISM(S): Schizosaccharomyces pombe 
2009-08-25 | E-GEOD-17271 | biostudies-arrayexpress
TranscriptomicsYeast X-Chromosome Associated Protein 5 (Xap5) Functions with H2A.Z to Suppress Aberrant Transcripts
This SuperSeries is composed of the SubSeries listed below. Refer to individual Series
ORGANISM(S): Schizosaccharomyces pombe 
2014-07-01 | E-GEOD-46506 | biostudies-arrayexpress
TranscriptomicsClr4/Suv39 and RNA quality control factors cooperate to trigger RNAi and suppress antisense RNA (expression)
Expression profile of Schizosaccharomyces pombe genome in ?mlo3, mlo3-A, mlo3-A?h2a.z, ?cid14?h2a.z and mlo3-A?cid14 cells. Expression profile of mutant cells compared to wild-type cells. Agilent 60mer oligonucleotide custom array containing probes spanning large portion of chromosome 2 at 50bp re...
ORGANISM(S): Schizosaccharomyces pombe 
2011-04-12 | E-GEOD-26995 | biostudies-arrayexpress
TranscriptomicsTaz1-Shelterin promotes facultative heterochromatin assembly at chromosome-internal sites containing late replication origins [BrdU]
BrdU profiling of replication activity in hydroxyurea treated synchronous culture of fission yeast. Facultative heterochromatin regulates gene expression, but its assembly is poorly understood. Previously, we identified facultative heterochromatin islands in the fission yeast genome and found that ...
ORGANISM(S): Schizosaccharomyces pombe 
2016-06-09 | E-GEOD-78819 | biostudies-arrayexpress
TranscriptomicsTaz1-Shelterin promotes facultative heterochromatin assembly at chromosome-internal sites containing late replication origins [Rec12]
Occupancy profiling of Rec12 during fission yeast meiosis. Facultative heterochromatin regulates gene expression, but its assembly is poorly understood. Previously, we identified facultative heterochromatin islands in the fission yeast genome and found that RNA elimination machinery promotes island...
ORGANISM(S): Schizosaccharomyces pombe 
2016-06-09 | E-GEOD-78821 | biostudies-arrayexpress
TranscriptomicsTaz1-Shelterin promotes facultative heterochromatin assembly at chromosome-internal sites containing late replication origins [Taz1]
Occupancy profiling of Shelterin components in fission yeast. Facultative heterochromatin regulates gene expression, but its assembly is poorly understood. Previously, we identified facultative heterochromatin islands in the fission yeast genome and found that RNA elimination machinery promotes isla...
ORGANISM(S): Schizosaccharomyces pombe 
2016-06-09 | E-GEOD-78822 | biostudies-arrayexpress
TranscriptomicsTaz1-Shelterin promotes facultative heterochromatin assembly at chromosome-internal sites containing late replication origins [H3K9me2]
ChIP-chip analyses of lysine 9 dimethylated histone H3 in Shelterin mutants. Facultative heterochromatin regulates gene expression, but its assembly is poorly understood. Previously, we identified facultative heterochromatin islands in the fission yeast genome and found that RNA elimination machiner...
ORGANISM(S): Schizosaccharomyces pombe 
2016-06-09 | E-GEOD-78820 | biostudies-arrayexpress
TranscriptomicsAsf1/HIRA facilitate global histone deacetylation and associate with HP1 to promote nucleosome occupancy at heterochromatic loci (MNase)
Nucleosome occupancy (NO) profiling in fission yeast Schizosaccharomyces pombe Agilent 60mer array was used to analyze mononucleosomal DNA recovered by MNase treatment from asynchronous culture of fission yeast.
ORGANISM(S): Schizosaccharomyces pombe 
2011-01-07 | E-GEOD-25600 | biostudies-arrayexpress
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