Zou J J - OmicsDI

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Unknown (10405)
Proteomics (193)
Transcriptomics (53)
Genomics (31)
Metabolomics (18)
Models (3)

Organisms

Aerococcus urinae NBRC 15544 = CCUG 36881 (142)
Alteromonadales (142)
Bacteria (142)
Canis lupus familiaris (142)
Carya cathayensis (142)
Cnidaria (142)
Ectopseudomonas oleovorans CECT 5344 (142)
Ensifer adhaerens (142)
Enterococcus faecalis (142)
Globicatella sanguinis (142)
Halictus scabiosae (142)
Histomonas meleagridis (142)
Homo sapiens (80)
Mus musculus (28)
Drosophila melanogaster (7)
Oryza sativa (2)
Rattus rattus (2)
Saccharomyces cerevisiae (1)
Brassica carinata x Brassica rapa (1)
Drosophila mojavensis (1)
Pyropia yezoensis (1)
Culex quinquefasciatus (1)
Brassica napus (1)
Salmo salar (1)
Triticum aestivum (1)
Aedes aegypti (1)
Hirsutella satumaensis (1)
Homo sapiens x Mus musculus hybrid cell line (1)
Nelumbo nucifera (1)
Nicotiana tabacum (1)

Repository

pride (142)
biostudies-arrayexpress (58)
iProX (41)
EGA (26)
MetaboLights (18)
MassIVE (7)
BioModels (3)
PeptideAtlas (2)
jPOST (1)

Tissue

Cell culture (36)
Epithelial cell (7)
Lung (7)
Blood (6)
Whole body (6)
Brain (5)
Liver (5)
Permanent cell line cell (5)
T cell (5)
Hepatocyte (4)
Testis (4)
Blood cell (3)
Blood plasma (3)
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Leaf (3)
Root (3)
Others (2)
Cell suspension culture (2)
Colonic mucosa (2)
Early embryonic cell (2)
Plant cell (2)
Skin (2)
Blood serum (1)
Cornea (1)
Embryo (1)
Embryonic stem cell (1)
Fat body (1)
HEK-293 cell (1)
HeLa cell (1)
JURKAT cell (1)

Disease

Disease free (6)
Cervix carcinoma (3)
Acute kidney failure (2)
Breast cancer (2)
Colon cancer (2)
Hepatocellular carcinoma (2)
Malignant neoplasm of ovary (2)
Severe acute respiratory syndrome (2)
Acute leukemia (1)
Brain ischemia (1)
Carcinoma (1)
Cardiovascular system disease (1)
Leukemia (1)
Oligospermia (1)
Pulmonary fibrosis (1)
Retinal disease (1)
Systemic lupus erythematosus (1)
Urinary bladder cancer (1)

Technology Type

Mass Spectrometry (142)
Shotgun proteomics (68)
Chemical cross-linking coupled with mass spectrometry proteomics (17)
Mass spectrometry (16)
Bottom-up proteomics (15)
Data-dependent acquisition (15)
Data-independent acquisition (10)
Gel-based experiment (9)
Affinity purification coupled with mass spectrometry proteomics (7)
Top-down proteomics (5)
SWATH MS (3)
Illumina HiSeq 2000, ILLUMINA (2)
NMR spectroscopy (2)
DiaPASEF (2)
Illumina HiSeq 2000, Affymetrix SNP 6.0 (1)
Affinity proteomics (1)
All-ion fragmentation (1)
MSE (1)
Mass spectrometry imaging (1)
Proteogenomics (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (8)
Liquid Chromatography MS - positive - reverse phase (6)
LTQ Orbitrap XL (3)
Illumina Genome Analyzer (2)
Illumina Genome Analyzer II (2)
Illumina HiSeq 4000 (2)
LTQ Velos (2)
Orbitrap Fusion Lumos (2)
Q Exactive (2)
Bruker (2)
HiSeq X Ten (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 2000 (1)
LTQ Orbitrap Velos (1)
LTQ XL (1)
Orbitrap Fusion (1)
Liquid Chromatography MS - alternating - HILIC (1)
Gas Chromatography MS - (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - Alternating (LC-MS (Alt)) (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - negative (1)
Liquid Chromatography MS - positive (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2025 (39)
2024 (37)
2022 (28)
2023 (26)
2021 (18)
2014 (13)
2020 (12)
2019 (12)
2016 (12)
2026 (11)
2017 (11)
2010 (10)
2015 (9)
2018 (8)
2011 (8)
2013 (5)
2012 (4)
2008 (3)
2009 (2)
2007 (2)
2005 (1)

UNIPROT ID/AC

A0A024RC46 (2)
A0A0A0MR66 (2)
A0A0A0MSA7 (2)
A0A0C4DG89 (2)
A0FGR8 (2)
A0FGR8-2 (2)
A0FGR8-6 (2)
A5A3E0 (2)
B1AKZ5 (2)
B4DHB3 (2)
B4DKM5 (2)
B4DRV9 (2)
B4DY08 (2)
B4E3A4 (2)
B8ZZQ6 (2)
B9VP19 (2)
E7EVA0 (2)
E7EX29 (2)
E9PAV3 (2)
G5E972 (2)
G8JLB6 (2)
H0Y612 (2)
H0YAC7 (2)
H0YFY6 (2)
H0YJH7 (2)
H0YM50 (2)
H7BXH2 (2)
I3L2J0 (2)
I3L4N8 (2)
J3KPF3 (2)

ENSEMBL ID

ENSG00000147251 (1)

CHEBI ID

CHEBI:30769 (9)
CHEBI:15741 (7)
CHEBI:16865 (7)
CHEBI:17568 (7)
CHEBI:18012 (7)
CHEBI:17368 (7)
CHEBI:15428 (6)
CHEBI:16958 (6)
CHEBI:7916 (6)
CHEBI:15891 (6)
CHEBI:18183 (6)
CHEBI:16704 (6)
CHEBI:16919 (6)
CHEBI:17895 (6)
CHEBI:17295 (6)
CHEBI:15756 (6)
CHEBI:17351 (6)
CHEBI:28997 (5)
CHEBI:17992 (5)
CHEBI:33508 (5)
CHEBI:48430 (5)
CHEBI:18186 (5)
CHEBI:18257 (5)
CHEBI:17562 (5)
CHEBI:28875 (5)
CHEBI:17148 (5)
CHEBI:6650 (5)
CHEBI:28044 (5)
CHEBI:17497 (5)
CHEBI:16196 (5)

Metabolite Name

Citric acid (5)
Glutaric acid (5)
Ketoleucine (4)
Pyroglutamic acid (4)
4-Pyridoxic acid (4)
L-Arginine (4)
Maleic acid (4)
Fumaric acid (4)
Palmitic acid (4)
L-Glutamine (4)
Cytidine (4)
Uridine (4)
Creatinine (4)
Creatine (4)
L-Phenylalanine (4)
Indoleacetic acid (3)
Threonic acid (3)
Glycine (3)
Uracil (3)
Homovanillic acid (3)
Glycolic acid (3)
Phenylacetic acid (3)
Ferulic acid (3)
Uracil (3)
N6-Acetyl-L-lysine (3)
Myristoleic acid (3)
Indoleacetaldehyde (3)
Hydroxyphenyllactic acid (3)
1-Aminocyclopropanecarboxylic acid (3)
Kynurenic acid (3)

IsPrivate

False (3)

Model Flag

Non Kinetic (2)

Modelling Approach

Constraint-based model (2)
Ordinary differential equation model (1)

Study type

Transcription profiling by array (24)
RNA-seq of coding RNA (18)
ChIP-seq (5)
Transcription profiling by tiling array (3)
Baseline (1)
Animal - High-throughput sequencing (1)
Transcription profiling by RT-PCR (1)
Bisulfite-seq (1)
Other (1)
Genotyping by high throughput sequencing (1)
RNA-seq of coding RNA from single cells (1)
RNA-seq of non coding RNA (1)

Release Date

2025 (1641)
2022 (1443)
2023 (1304)
2024 (1246)
2021 (1080)
2020 (810)
2019 (585)
2018 (441)
2017 (387)
2016 (328)
2015 (272)
2026 (225)
2014 (224)
2013 (151)
2012 (88)
2011 (77)
2009 (51)
2010 (50)
2008 (24)
2007 (12)
2005 (7)
2006 (6)
2004 (4)
2003 (3)
2000 (2)
2002 (1)
1999 (1)

Lab affiliation

Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (5)
Alkali Soil Natural Environmental Science Center, Northeast Forestry University, Harbin 150040, China (2)
College of Horticulture, Hunan Agricultural University (2)
College of Life Sciences, South-Central University for Nationalities (2)
Department of Surgery, University of Michigan Medical School, Ann Arbor, MI, USA (2)
Institute of Medical Biology, Chinese Academy of Medical Science and Peking Union Medical School, Kunming, China. (2)
Institute of Zoology, Chinese Academy of Sciences (2)
Key Laboratory of Modern Toxicology of Shenzhen, Shenzhen Center for Disease Control and Prevention, No. 8, Longyuan Road, Nanshan District, Shenzhen, China 518055. (2)
Laboratory of Immunogenetics, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Rockville, MD, USA (2)
No.892, Yuanda 2 Road, furong district, changsha，Hunan province (2)
Ottawa Institute of Systems Biology and Department of Biochemistry, Microbiology and Immunology, Faculty of Medicine, University of Ottawa, Ottawa, Ontario, Canada (2)
Shenzhen People’s Hospital (2)
Tianjin Medical University General Hospital (2)
University of Edinburgh (2)
Zhejiang University (2)
1. Ministry of Education Key Laboratory of Biosystems Homeostasis & Protection, College of Life Sciences, Zhejiang University, Hangzhou, China 2. Cancer Center, Zhejiang University, Hangzhou, China (1)
1. Wellcome Centre for Cell Biology, University of Edinburgh, Edinburgh EH9 3BF, UK 2. Technical University, Berlin 13355, Germany (1)
1.Wellcome Centre for Cell Biology, University of Edinburgh, Edinburgh EH9 3BF, United Kingdom 2.Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, Gustav-Meyer-Allee 25, 13355 Berlin, Germany (1)
1Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Padualaan 8, 3584 CH, Utrecht, The Netherlands 2Netherlands Proteomics Center, Padualaan 8, 3584 CH, Utrecht, The Netherlands (1)
1Wellcome Centre for Cell Biology, School of Biological Sciences, University of Edinburgh 2Chair of Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, Berlin, 13355, Germany (1)
Academy of Orthopedics, Guangdong Province, Guangdong Provincial Key Laboratory of Bone and Joint Degeneration Diseases, The Third Affiliated Hospital of Southern Medical University, Guangzhou, Guangdong, China (1)
Basic Forestry and Proteomics Research Center, Fujian Agriculture and Forestry University, China (1)
Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS) Technical University Munich (TUM) Gregor-Mendel-Straße 4 85354 Freising GERMANY (1)
Beijing Institute of Pharmacology and Toxicology (1)
Beijing Key Laboratory for Radiobiology, Beijing Institute of Radiation Medicine, Beijing 100850, P.R. China (1)
Beijing Tongren Hospital, Capital Medical University (1)
Bengbu medical college (1)
Biological Chemistry and Molecular Pharmacology, Harvard Medical School Cancer Biology, Dana-Farber Cancer Institute (1)
Biomolecular Mass Spectrometry and Proteomics Utrecht University The Netherlands (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands (1)

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Exploring the Interactions between two Ligands, UCB-J and UCB-F, and Synaptic Vesicle Glycoprotein 2 Isoforms.

Not available

S-EPMC11099911 | biostudies-literature

Zou2007_MAPK_SignalingNetworks

This a model from the article: Modeling specificity in the yeast MAPK signaling networks Zou X, Peng T, Pan Z J. Theor. Biol. (2008);250(1):139-55 17977559 , Abstract: Cells sense several kinds of stimu...

2005-01-01 | MODEL7519354389 | BioModels

Case Report: J-Shaped External Fixator for Treatment of Mayo Type II Olecranon Fractures - A Novel Surgical Technique and Report of Clinical Applications.

Not available

S-EPMC9240390 | biostudies-literature

Pestalafuranones F-J, five new furanone analogues from the endophytic fungus Nigrospora sp. BM-2.

Not available

S-EPMC6271264 | biostudies-literature

Genome-wide Analysis Reveals Conserved and Divergent Features of Notch1/RBPJ Binding in Human and Murine T Lymphoblastic Leukemia Cells

Notch1 regulates gene expression by associating with the DNA-binding factor RBPJ and is oncogenic in murine and human T cell progenitors. Using ChIP-Seq, we find that in human and murine T-LL genomes Notch1 binds preferentially to promoters, to RBPJ binding sites, and near imputed ZNF143, Ets and Ru...

ORGANISM(S): Mus musculus

2011-07-06 | E-GEOD-29600 | biostudies-arrayexpress

Fimbriatols A-J, Highly Oxidized ent-Kaurane Diterpenoids from Traditional Chinese Plant Flickingeria fimbriata (B1.) Hawkes.

Not available

S-EPMC4971462 | biostudies-literature

Identification of SNPs associated with magnesium and sodium uptake and the effect of their accumulation on micro and macro nutrient levels in Vitis vinifera.

Not available

S-EPMC7877238 | biostudies-literature

Chronic ethanol-mediated hepatocyte apoptosis links to decreased TET1 and 5-hydroxymethylcytosine formation.

Not available

S-EPMC6338639 | biostudies-literature

Ubiquitin Ligase RBX2/SAG Regulates Mitochondrial Ubiquitination and Mitophagy.

Not available

S-EPMC11264309 | biostudies-literature

Flavonoid Biosynthesis Is Likely More Susceptible to Elevation and Tree Age Than Other Branch Pathways Involved in Phenylpropanoid Biosynthesis in Ginkgo Leaves

Ginkgo leaves are always resources for flavonoids pharmaceutical industry. However, the effect of the elevation and tree age changes on flavonoid biosynthesis have not been detailly explored in Ginkgo leaves. In addition, whether these environmental pressures have similar effects on the biosynthesis...

2020-12-14 | MTBLS962 | MetaboLights

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