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Unknown (3272)
Proteomics (70)
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Homo sapiens (48)
Mus musculus (30)
Campylobacter jejuni (4)
Zea mays (3)
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Xenopus laevis (1)

Organisms

Mus musculus (1)

Repository

pride (47)
biostudies-arrayexpress (28)
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Technology Type

Mass Spectrometry (47)
Shotgun proteomics (25)
Bottom-up proteomics (14)
Mass spectrometry (8)
Affinity purification coupled with mass spectrometry proteomics (4)
Mass spectrometry assay (3)
Chemical cross-linking coupled with mass spectrometry proteomics (3)
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Data-dependent acquisition (2)
NMR spectroscopy (1)
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SWATH MS (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (9)
Liquid Chromatography MS - positive - reverse phase (8)
Q Exactive (2)
Orbitrap Exploris 240 (1)
ZenoTOF 7600 (1)
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Liquid Chromatography MS - (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
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Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)
Nuclear Magnetic Resonance (NMR) (1)

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2014 (11)
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2020 (4)
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2011 (2)
2008 (2)
2010 (1)
2009 (1)
2007 (1)
2018 (1)

CHEBI ID

CHEBI:15354 (6)
CHEBI:17368 (6)
CHEBI:27897 (4)
CHEBI:28300 (4)
CHEBI:15891 (3)
CHEBI:15971 (3)
CHEBI:16359 (3)
CHEBI:16525 (3)
CHEBI:16737 (3)
CHEBI:16750 (3)
CHEBI:16755 (3)
CHEBI:16811 (3)
CHEBI:16919 (3)
CHEBI:17154 (3)
CHEBI:17295 (3)
CHEBI:17596 (3)
CHEBI:17597 (3)
CHEBI:17750 (3)
CHEBI:17895 (3)
CHEBI:18132 (3)
CHEBI:18186 (3)
CHEBI:20067 (3)
CHEBI:25094 (3)
CHEBI:27471 (3)
CHEBI:28044 (3)
CHEBI:28790 (3)
CHEBI:28865 (3)
CHEBI:29016 (3)
CHEBI:36274 (3)
CHEBI:43355 (3)

Metabolite Name

L-Tyrosine (4)
Adenine (3)
Cholic acid (3)
Deoxycholic acid (3)
Guanosine (3)
Hypoxanthine (3)
Pentadecanoic acid (3)
Stearic acid (3)
Taurine (3)
Thymidine (3)
1-Palmitoyl-Sn-Glycero-3-Phosphocholine (2)
2-Furoic acid (2)
3,4,5-trihydroxycyclohex-1-ene-1-carboxylic acid (2)
4-Dodecylbenzenesulfonic Acid (2)
Adipic acid (2)
Adrenic acid (2)
Allantoin (2)
Arachidonic acid (2)
Azelaic acid (2)
Choline (2)
Citric acid (2)
D-Glucuronic acid (2)
DL-Dopa (2)
Deoxyinosine (2)
Gallic acid (2)
Genistein (2)
Gluconolactone (2)
Glutaric Acid (2)
Glyceraldehyde (2)
Glycolithocholic acid (2)

First Public Date

2014 (1)

Modification

4-tetrahydrothiazine-3-carboxylic acid (1)
N6 (1)

Study type

Transcription profiling by array (18)
Comparative genomic hybridization by array (4)
RNA-seq of coding RNA (4)
Other (1)
RNA-seq of non coding RNA (1)

Release Date

2025 (547)
2022 (466)
2023 (402)
2024 (392)
2021 (356)
2020 (230)
2019 (169)
2018 (146)
2016 (102)
2017 (101)
2026 (91)
2015 (75)
2014 (62)
2013 (36)
2012 (30)
2011 (27)
2010 (21)
2009 (21)
2008 (11)
2006 (5)
2007 (4)
2004 (2)
1999 (2)
1998 (1)
1997 (1)

Lab affiliation

Center for Proteomics & Metabolomics, St. Jude Children's Research Hospital, Memphis, TN 38105, USA (4)
Epigenetics Program, Department of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania (3)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute of Pharmaceutical Sciences, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands (2)
Department of Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA (2)
School of Laboratory Medicine and Biotechnology, Southern Medical University (2)
1 Joint International Research Laboratory of Agriculture and Agri-Product Safety of Ministry of Education of China, Yangzhou University, Yangzhou, Jiangsu225009, P.R. China 2 Key Laboratory of Animal Breeding Reproduction and Molecular Design for Jiangsu Province, College of Animal Science and Technology, Yangzhou University, Yangzhou, Jiangsu225009, P.R. China (1)
Basic Forestry and Proteomics Research Center, Fujian Agriculture and Forestry University, China (1)
Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (1)
Beijing Academy of Agriculture and Forestry Sciences (1)
Center for Proteomics and Metabolomics St. Jude Children's Research Hospital (1)
China-Japan Friendship Hospital, Beijing, China (1)
China-Japan Friendship Hospital, China (1)
Department of Analytical Chemistry and CAS Key Laboratory of Receptor Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai 201203, China (1)
Department of Anesthesiology and Perioperative Medicine, Xijing Hospital,the Fourth Military Medical University, Xi'an 710032, China (1)
Department of Biochemistry and Biophysics, University of Pennsylvania School of Medicine (1)
Department of Cellular and Genetic Medicine, School of Basic Medical Sciences, Fudan University, Shanghai (1)
Department of Hematology, The Affiliated Cancer Hospital of Zhengzhou University & Henan Cancer Hospital, Zhengzhou, China (1)
Department of Pharmaceutical Sciences, St. Jude Children's Research Hospital, Memphis, TN 38105, USA (1)
Department of Structural Biology and Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA (1)
Department of Surgery The Ohio State University Wexner Medical Center (1)
Fisheries College, Key Laboratory of Healthy Mariculture for the East China Sea, Ministry of Agriculture, Jimei University, Xiamen, Fujian, PR China. (1)
Fujian Agriculture and Forestry University-BFPC (1)
Insitute of Basic Medical Sciences, Chinese Academy of Medical Sciences (1)
Institute of Basic Medical Sciences, School of Basic Medicine, Peking Union Medical College; Dongdansantiao 5, Beijing, China. (1)
JiLin University (1)
JiLin university (1)
Jiangnan University, No. 1800 Lihu Avenue, Binhu District, Wuxi City, Jiangsu Province (1)
Key Laboratory of Cell Proliferation and Differentiation of the Ministry of Education, School of Life Sciences, Peking-Tsinghua Center for Life Sciences, Peking University, Beijing 100871, China (1)
Penn Epigenetics Institute Department of Biochemistry and Biophysics Smilow Center for Translational Research University of Pennsylvania School of Medicine (1)
Professor of Biochemistry and Biophysics, University of Pennsylvania School of Medicine (1)

Tags

xref:PubMed:21690297 (1)

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Coordinate-based simulation of pair distance distribution functions for small and large molecular assemblies: implementation and applications.

Not available

S-EPMC11460383 | biostudies-literature

X-ray scattering combined with coordinate-based analyses for applications in natural and artificial photosynthesis.

Not available

S-EPMC2891609 | biostudies-literature

Transcription profiling of human LNCaP prostate cancer cell line to identify FOXP3 targets

As we clarified before, the FOXP3 gene is an X-linked tumor suppressor gene of both human and mouse. We also clarified that the ERBB2, SKP2 and p21 genes were transcriptionally under control of FOXP3 in human epithelial cells. In order to further clarify the FOXP3 down stream targets in human cancer...

ORGANISM(S): Homo sapiens

2009-12-11 | E-MTAB-108 | biostudies-arrayexpress

Structure Characterization of Bacterial Microcompartment Shells via X-ray Scattering and Coordinate Modeling: Evidence for Adventitious Capture of Cytoplasmic Proteins.

Not available

S-EPMC12707174 | biostudies-literature

Solution-state conformational ensemble of a hexameric porphyrin array characterized using molecular dynamics and X-ray scattering.

Not available

S-EPMC4965877 | biostudies-literature

Identification of a new adtrp1-tfpi regulatory axis for the specification of primitive myelopoiesis and definitive hematopoiesis.

Not available

S-EPMC5731125 | biostudies-literature

Astrocytic Contributions to Synaptic and Learning Abnormalities in a Mouse Model of Fragile X Syndrome.

Not available

S-EPMC5348290 | biostudies-literature

Expression analysis of fully-grown oocyte collected from mouse wild-type, Hsf1 mutant or Hsf2 mutant

Investigation of whole genome gene expression level changes in oocytes Hsf1-/- or Hsf2-/- compared to wild-type. The mutants analyzed in this study are further described in McMillan DR, Xiao X, Shao L, Graves K, Benjamin IJ. 1998. Targeted disruption of heat shock transcription factor 1 abolishes th...

ORGANISM(S): Mus musculus

2011-06-30 | GSE26240 | GEO

Mechanochemical synthesis of pure phase mixed-cation/anion (FAPbI₃) _x (MAPbBr₃)_1-x hybrid perovskite materials: compositional engineering and photovoltaic performance.

Not available

S-EPMC8694776 | biostudies-literature

X-ray diffraction "fingerprinting" of DNA structure in solution for quantitative evaluation of molecular dynamics simulation.

Not available

S-EPMC1383498 | biostudies-literature

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