cold seep - OmicsDI

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Genomics (442)
Unknown (195)
Proteomics (11)
Transcriptomics (3)
Metabolomics (2)

Organisms

Nitrosomonas sp. (11)
Pseudoramibacter alactolyticus (11)
Pseudomonas aeruginosa PA1 (11)
Nitrospira sp. (11)
unclassified Heliamphora (11)
Enterococcus faecium ERV165 (11)
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Candidatus Neomicrothrix (11)
Bison bonasus (11)
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Mycobacterium phage Che8 (11)
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Mycobacterium phage Myrna (11)
Pseudomonas phage PhiPA3 (11)
Chlorobaculum tepidum TLS (11)
Proteus mirabilis HI4320 (11)
NEWT:1720309 (11)
Leishmania mexicana MHOM/GT/2001/U1103 (11)
unclassified Thermococcus (11)
Pseudonaja aspidorhyncha (11)
Pseudonaja modesta (11)
Daphnia magna (11)
Phytophthora sojae (11)
Leptopilina boulardi (11)
Pseudonaja textilis (11)
Oryza sativa Indica Group x Oryza sativa Japonica Group (11)
Paraescarpia echinospica (2)
Mytilus galloprovincialis (1)

Organisms

cold seep metagenome (134)
sediment metagenome (105)
marine sediment metagenome (18)
Gigantidas platifrons (4)
Gigantidas haimaensis (3)
marine metagenome (3)
Paraescarpia echinospica (2)
Stutzerimonas chloritidismutans (2)
Mytilus galloprovincialis (2)
Acharax haimaensis (2)
mollusc metagenome (2)
Bathymodiolus platifrons methanotrophic gill symbiont (1)
Bremerella volcania (1)
Spongiibacter nanhainus (1)
Archivesica packardana (1)
Aerophobetes bacterium AeroCD12-1 (1)
Oceanidesulfovibrio marinus (1)
Nitrincola iocasae (1)
Nitrosopumilus sp. Nsub (1)
endosymbiont of Lamellibrachia barhami (1)
Planococcus sp. RAB007_Raresut (1)
Idiomarina sp. E13 (1)
Gammaproteobacteria bacterium Gsub (1)
Lamellibrachia sp. ind01 (1)
Shinkaia crosnieri (1)
Virgibacillus halodenitrificans (1)
Exiguobacterium profundum (1)
Bathymodiolus japonicus (1)
Penicillium sp. (1)
Salegentibacter haimaensis (1)

Repository

ENA (432)
pride (11)
NODE (10)
geo (3)
MetaboLights (2)

Tissue

Cell culture (4)
Gill (1)
Whole body (1)

Technology Type

Mass Spectrometry (11)
Shotgun proteomics (8)
Bottom-up proteomics (2)
Mass spectrometry assay (1)
Mass spectrometry (1)
Gel-based experiment (1)

Instrument Platform

MS Imaging - negative (1)
MS Imaging - positive (1)
MS Imaging - (1)

CHEBI ID

CHEBI:64340 (1)
CHEBI:24346 (1)
CHEBI:15732 (1)
CHEBI:16457 (1)
CHEBI:33942 (1)
CHEBI:17057 (1)
CHEBI:30805 (1)
CHEBI:59640 (1)
CHEBI:29019 (1)
CHEBI:4170 (1)
CHEBI:17126 (1)
CHEBI:17234 (1)
CHEBI:29864 (1)
CHEBI:17562 (1)
CHEBI:27470 (1)
CHEBI:25017 (1)
CHEBI:15428 (1)
CHEBI:28044 (1)
CHEBI:17821 (1)
CHEBI:28812 (1)
CHEBI:18300 (1)
CHEBI:17189 (1)
CHEBI:32816 (1)
CHEBI:16199 (1)
CHEBI:30769 (1)

Metabolite Name

Phosphonoacetic acid (1)
Dimethylsulfoniopropionic acid (1)
Aminomethylphosphonate (1)
Octadecaneuropeptide (1)
Ganglioside GT3 (d44:0) (1)
Angiotensinogen (1)
(Tyr4,D-Phe12)-Bombesin (1)
SM d36:2 (1)
CL(11:0/18:2(9Z,11Z)/18:2(9Z,11Z)/a-21:0) (1)
Disialyllacto-N-tetraose (1)
Ganglioside GM3 (d34:1) (1)
1alpha,3beta,22R-Trihydroxyergosta-5,24E-dien-26-oic acid 3-O-b-D-glucoside 26-O-[b-D-glucosyl-(1->4)-b-D-glucosyl-(1->2)-6-acetyl-b-D-glucosyl] ester (1)
(2S)-2-amino-4-{[(1R)-1-[(carboxymethyl)carbamoyl]-2-[(hydroxymethyl)sulfanyl]ethyl]carbamoyl}butanoyl-CoA (1)
Etheno adenosine triphosphate (1)
Dakh peptide (1)
TG(62:15) (1)
3-oxo-dodecanoyl-CoA (1)
Nitrocellulose (1)
Sanguiin H11 (1)
TG(59:8) (1)
TG(57:3) (1)
TG(57:4) (1)
TG(57:9) (1)
PC(44:2) (1)
Castor oil (1)
TG(55:8) (1)
PA(49:0) (1)
TG(53:7) (1)
Isolampranthin II (1)
Isoestragole (1)

First Public Date

2020 (118)
2018 (101)
2024 (44)
2026 (38)
2025 (35)
2023 (21)
2022 (20)
2021 (16)
2019 (10)
2017 (10)
2015 (9)
2014 (5)
2016 (3)
2013 (2)

Classification

bacteria (1)

Release Date

2023 (30)
2025 (28)
2022 (26)
2024 (22)
2021 (12)
2020 (12)
2017 (9)
2016 (9)
2019 (8)
2014 (7)
2013 (7)
2015 (6)
2026 (3)
2018 (3)
2011 (3)
2012 (2)
2009 (2)
2005 (2)
2010 (1)
2004 (1)
2003 (1)
2000 (1)

Lab affiliation

Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China (3)
Institute of Oceanology Chinese Academy of Sciences (3)
The Institute of Oceanology Chinese Academy of Sciences (1)
Department of Biology,Hong Kong Baptist University, Hong Kong, China (1)
CAS Key Laboratory of Experimental Marine Biology & Center of Deep Sea Research, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, 266071, China (1)
The Institute of Oceanology, Chinese Academy of Sciences (1)
Institute of Oceanology, Chinese Academy of Sciences (1)

Publication date

2024 (5)
2026 (3)
2021 (3)
2022 (3)
2025 (1)
2023 (1)

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Spatial metabolomics in the seep holobiont Chaetoderma shenloong hosting chemosymbiont using DESI

Symbiosis with chemoautotrophic bacteria has evolved in many animal lineages inhabiting reducing habitats such as hydrothermal vents, allowing these holobionts to thrive in dark biospheres. In certain instances, the symbionts have become intracellular, residing within specialised bacteriocytes. The ...

2026-08-23 | MTBLS15431 | MetaboLights

cold seep metagenome

cold seep bin

PRJNA593687 | ENA

cold seep metagenome

cold seep metagenome Genome sequencing

PRJNA702903 | ENA

cold seep sediments metagenomes

Haima cold seep sediments metagenomes

PRJNA738468 | ENA

cold seep sediments

Microbiomes in the cold seep sediments