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GenomicsH3K27me3 in human bladder transitional cell carcinoma cell line CL1207
The H3K27me3 ChIP-seq data for the human bladder transitional cell carcinoma cell line CL1207 were generated in order to detect regions of regional epigenetic silencing in this cell line and test the performance of several peak calling tools: CCAT (Xu et al., 2010) and HMCan (Ashoor et al., "HM...
ORGANISM(S): Homo sapiens 
2014-01-07 | E-GEOD-44438 | biostudies-arrayexpress
TranscriptomicsAnalysis of colorectal tissue from APC- and MYH-associated polyposis patients
Expression profiling is a well established tool for the genome-wide analysis of the transcriptional activity of human neoplasia. However, the high sensitivity of this approach combined with the well-known cellular and molecular heterogeneity of cancer often result in extremely complex and extended e...
ORGANISM(S): Homo sapiens 
2008-04-01 | E-GEOD-9689 | biostudies-arrayexpress
TranscriptomicsListening in on a bacterial/fungal dialog: transcriptional profiling of an antagonistic interaction
The genus Collimonas consists of soil bacteria that are well known for their antifungal activity and for mycophagy, i.e. the ability to grow at the expense of living fungi. The aim of the current study was to gain a better understanding of the mechanisms of antagonism of Collimonas bacteria towards ...
ORGANISM(S): Collimonas fungivorans 
2011-06-20 | E-MTAB-350 | biostudies-arrayexpress
UnknownDecoding the Human Immunoglobulin G-Glycan Repertoire Reveals a Spectrum of Fc-Receptor- and Complement-Mediated-Effector Activities.
Not available
S-EPMC5539844 | biostudies-literature
UnknownDietary polyphenols promote resilience against sleep deprivation-induced cognitive impairment by activating protein translation.
Not available
S-EPMC6133707 | biostudies-literature
UnknownSelectivity over coverage in de novo sequencing of IgGs.
Not available
S-EPMC7814886 | biostudies-literature
TranscriptomicsMicroRNAs characterize genetic diversity and drug resistance in pediatric acute lymphoblastic leukemia
MicroRNAs (miRNAs) regulate activity of protein-coding genes including those involved in hematopoietic cancers. The goal of the current study was to explore which miRNAs are unique for seven different subtypes of pediatric acute lymphoblastic leukemia (ALL). Therefore, the expression levels of 397 m...
ORGANISM(S): Homo sapiens 
2011-02-11 | E-GEOD-23024 | biostudies-arrayexpress
TranscriptomicsPro-osteogenic trophic effects by PKA activation in human mesenchymal stromal cells
Human mesenchymal stromal cells (hMSCs) are able to differentiate into a wide variety of cell types, which makes them an interesting source for tissue engineering applications. On the other hand, these cells also secrete a broad panel of growth factors and cytokines that can exert trophic effects on...
ORGANISM(S): Homo sapiens 
2018-10-06 | E-MTAB-7224 | biostudies-arrayexpress
TranscriptomicsTranscription profiling and proteomic profiling of rat colon mucosa from rats fed quercetin
Quercetin has been shown to act as an anti-carcinogen in experimental colorectal cancer (CRC). The aim of the present study was to characterise transcriptome and proteome changes occurring in the distal colon mucosa of rats supplemented with 10 g quercetin/kg diet for 11 weeks. Transcriptome data an...
ORGANISM(S): Rattus norvegicus 
2008-06-15 | E-GEOD-7479 | biostudies-arrayexpress
TranscriptomicsCombined transcriptomics classifier analysis reveals a set of adverse effect genes for use as potential endpoint in effect based screening
Environmental risk assessment relies heavily on the use of bioassays to assess the environmental impact of chemicals. Gene expression is gaining acceptance as a valuable mechanistic endpoint in bioassays and effect-based screening. Data analysis and its results however, are often complex and not dir...
ORGANISM(S): Folsomia candida 
2015-11-09 | E-GEOD-70877 | biostudies-arrayexpress
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