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UnknownIntegrating long-range connectivity information into de Bruijn graphs.
Not available
S-EPMC6061703 | biostudies-literature
UnknownCompact representation of k-mer de Bruijn graphs for genome read assembly.
Not available
S-EPMC4015147 | biostudies-literature
UnknowncloudSPAdes: assembly of synthetic long reads using de Bruijn graphs.
Not available
S-EPMC6612831 | biostudies-literature
TranscriptomicsSmall RNA expression and strain specificity in the rat
Background Digital gene expression (DGE) profiling has become an established tool to study RNA expression. Here, we provide an in-depth analysis of small RNA DGE profiles from two different rat strains (BN-Lx and SHR) from six different rat tissues (spleen, liver, brain, testis, heart, kidney). We ...
ORGANISM(S): Rattus norvegicus 
2010-02-17 | E-GEOD-19054 | biostudies-arrayexpress
UnknownHaploflow: Strain-resolved de novo assembly of viral genomes.
Not available
S-EPMC7852260 | biostudies-literature
UnknownEmpirical evaluation of methods for de novo genome assembly.
Not available
S-EPMC8279138 | biostudies-literature
UnknownImproving the quality of barley transcriptome de novo assembling by using a hybrid approach for lines with varying spike and stem coloration.
Not available
S-EPMC8627909 | biostudies-literature
TranscriptomicsRNA sequencing of mouse DCs
RNA-Seq data were targeted for de novo assembly and reconstruction of full-length mouse transcripts. Sequencing of RNA taken from unstimulated DCs.
ORGANISM(S): Mus musculus 
2011-05-12 | E-GEOD-29209 | biostudies-arrayexpress
UnknownNeatFreq: reference-free data reduction and coverage normalization for De Novo sequence assembly.
Not available
S-EPMC4245761 | biostudies-literature
TranscriptomicsIdentification of microRNAs association with Rheumatoid Arthritis Synovial Fibroblasts using the Human TNF Transgenic Mouse Model
OBJECTIVE: MicroRNAs (miRNAs, miRs), a class of small non-coding RNA molecules, are posttranscriptional regulators involved in a plethora of cellular functions and have been proposed as potential therapeutic targets in various diseases, including rheumatoid arthritis (RA). In this study, we sought t...
ORGANISM(S): Mus musculus 
2012-05-13 | E-GEOD-31667 | biostudies-arrayexpress
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