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TranscriptomicsSystemic suppression of the rice shoot metabolism upon root rot nematode infection
Rice (Oryza sativa L.) is one of the most important staple foods in the world, feeding more than 50% of the human population. One of its most damaging pathogens, with major impact on rice yield, is the migratory root rot nematode Hirschmanniella oryzae. In comparison with the existing knowledge on t...
ORGANISM(S): Oryza sativa Japonica Group 
2015-05-18 | E-GEOD-57707 | biostudies-arrayexpress
TranscriptomicsTranscriptome analysis of rice roots and tips in early development by massive parallel sequencing
Despite the major physiological dissimilarities between roots and their tips, differences in their gene expression profiles remain largely unexplored. In this research, the transcriptome of rice (Oryza sativa L. subsp. Japonica) mature root tissue and root tips was monitored using mRNA-Seq at 2 time...
ORGANISM(S): Oryza sativa Japonica Group 
2012-01-12 | E-GEOD-30367 | biostudies-arrayexpress
UnknownYeast Two-Hybrid: State of the Art.
Not available
S-EPMC140126 | biostudies-literature
TranscriptomicsTranscriptional reprogramming by root knot and migratory nematode infection in rice
In this study a comparison was made between the local transcriptional changes at two time points upon root knot (Meloidogyne graminicola) and migratory nematode (Hirschmanniella oryzae) infection in rice. Using mRNA-Seq we have characterized specific and general responses of the root challenged with...
ORGANISM(S): Oryza sativa Japonica Group 
2013-01-10 | E-GEOD-35843 | biostudies-arrayexpress
UnknownAn update on sORFs.org: a repository of small ORFs identified by ribosome profiling.
Not available
S-EPMC5753181 | biostudies-literature
UnknownQuantitative transcriptomic and epigenomic data analysis: a primer.
Not available
S-EPMC10997052 | biostudies-literature
UnknownN-terminal proteomics and ribosome profiling provide a comprehensive view of the alternative translation initiation landscape in mice and men.
Not available
S-EPMC4014282 | biostudies-literature
UnknownHaplotyping pharmacogenes using TLA combined with Illumina or Nanopore sequencing.
Not available
S-EPMC9587992 | biostudies-literature
UnknownEvaluation of bisulfite kits for DNA methylation profiling in terms of DNA fragmentation and DNA recovery using digital PCR.
Not available
S-EPMC6002050 | biostudies-literature
UnknownPhaLP: A Database for the Study of Phage Lytic Proteins and Their Evolution.
Not available
S-EPMC8310338 | biostudies-literature
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