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E-GEOD-62315

ABSTRACT: Transcription profiling by array of 30-day old detached grape leaves exposed to ultraviolet C radiation for 6 or 12 hours against unexposed controls

OTHER RELATED OMICS DATASETS IN: PRJNA263817

PROVIDER: E-GEOD-62315 | ExpressionAtlas | 2014-12-05

REPOSITORIES: ExpressionAtlas

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Dataset's files

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			Action	DRS
	E-GEOD-62315-analysis-methods.tsv	Tabular
	E-GEOD-62315-atlasExperimentSummary.Rdata	Rdata
	E-GEOD-62315-configuration.xml	Xml
	E-GEOD-62315-percentile-ranks.tsv	Tabular
	E-GEOD-62315.condensed-sdrf.tsv	Tabular

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Transcriptomic analysis of grape (Vitis vinifera L.) leaves exposed to ultraviolet C radiation

Project description:Solar ultraviolet C（UV-C）radiation reaching the Earth’s surface is little due to the filtering effects of the stratospheric ozone layer. At present, artificial UV-C irradiation is utilized for different biological processes. Grape is a major fruit crop around the world. Research has shown that UV-C irradiation induced the biosynthesis of phenols. However, changes at the molecular level in response to UV-C and leading to these effects are poorly understood. To elucidate the effect of UV-C on expression of genes in grape and the response mechanism, transcript abundance of grape (Vitis vinifera L.) leaves was quantified using the Affymetrix Grape Genome oligonucleotide microarray (15,700 transcripts) Grape leaves were exposed to UV-C irradiation at 6W/m2 for 10 min. LCK-0-1, LCK-0-2 and LCK-0-3 are 0 h after the initiation of treatment and as the controls; LTR-6-1, LTR-6-2 and LTR-6-3 are for 6 h after the initiation of treatment; LTR-12-1, LTR-12-2 and LTR-12-3 are for 12 h after the initiation of treatment. Three replicates for each time point. 9 samples in all.

2014-11-15 | E-GEOD-62315 | biostudies-arrayexpress

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Project description:RNA-seq of etiolated 9 day old maize seedling second leaves after exposure to either blue, red or no light conditions for three hours

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Vitis vinifera

Project description:Transcriptomic analysis of grape (Vitis vinifera L.) leaves exposed to ultraviolet C radiation

| PRJNA263817 | ENA

Transcriptomic analysis of grape (Vitis vinifera L.) leaves exposed to ultraviolet C radiation

2014-11-15 | GSE62315 | GEO

E-GEOD-38997

Project description:Expression data from Caenorhabditis elegans L1-stage larvae exposed to ethidium bromide and/or serial ultraviolet C radiation

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E-GEOD-43865

Project description:RNA-seq of coding RNA from 9-day old Arabidopsis seedlings of link1link2 double mutants against wild-type controls grown under continuuous light or long day conditions and sampled across a 24-hour time-course

2019-05-14 | E-GEOD-43865 | ExpressionAtlas

E-MTAB-7595

Project description:RNA-seq of heart tissue from 15 day old mice 4 hours post MycER activation compared to wild type controls. RNA-seq of heart tissues from adult mice that have expressed oncogenic H-Ras for 4 weeks followed by MycER activation for 4 hours compared to MycER negative controls.

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Phosphoproteomics reveals regulation of secondary metabolites in Mahonia bealei under ultraviolet-B radiation

Project description:Mahonia Bealei was used as a traditional Chinese medicine for its high alkaloid content. Previous research found that alkaloid and flavonoid contents in the M. bealei leaves increased under combinatory treatments of ultraviolet B and dark. In order to explore the underlying response mechanism, TiO2 material enrichment and mass-based label-free quantitative proteomics techniques were used for phosphoproteomics analysis of M. bealei leaves under ultraviolet B. ATP content, photosynthetic pigment content, and some enzymatic/non-enzymatic indicators increased in the leaves of M. bealei under UV-B radiation. Phosphoproteomics study found that under the UV-B radiation, phosphoproteins related to MAPK signal transduction and plant hormone brassinosteroid signaling pathway were varied greatly. Phosphoproteins related to photosynthesis, glycolysis, tricarboxylic acid cycle, and amino acid synthesis/metabolism pathway were also significantly changed. These results suggested that the ultraviolet B radiation activated oxidative stress system, MAPK signal transduction pathway, and photosynthetic energy metabolism pathway. These changes are important for the redox reactions in secondary metabolism and the accumulation of secondary metabolites in M. bealei leaves under UV-B radiation.

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RNAseq of human buttock skin from healthy controls exposed to solar simulated radiation

Project description:The aim of this study was to investigate cutaneous cellular and molecular events in the photodermatoses (including solar urticaria and photoaggravated atopic dermatitis) following solar simulated ultraviolet radiation (SSR) exposure, and this dataset comprised the healthy controls (HC). Cutaneous biopsies were taken from unexposed skin and from skin exposed to a single low (physiological) dose of SSR, at 30 minutes, 3 hours, 24 hours and 72 hours post-exposure, in n=6 HC. Biopsies were assessed by immunohistochemistry (n=6 HC) and RNA-sequencing analysis (n=4 HC).

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