Dataset Information

Lu2021-Genome scale metabolic models for yeast species of clade Pichiaceae

ABSTRACT: This is genome-scale metabolic model of Komagataella pastoris as the representative yeast species for the clade Pichiaceae. This model was generated through homology search using a fungal pan-GEM largely based on Yeast8 for Saccharomyces cerevisiae, in addition to manual curation. This model has been produced by the Yeast-Species-GEMs project from Sysbio (www.sysbio.se). This is model version 1.0.0 accompanying the publication (DOI: 10.15252/msb.202110427), currently hosted on BioModels Database and identified by MODEL2109130009. Further curations of this model will be tracked in the GitHub repository: https://github.com/SysBioChalmers/Yeast-Species-GEMs Models for species of the same clade includes: Ambrosiozyma kashinagacola; Ambrosiozyma monospora; Brettanomyces anomalus; Candida arabinofermentans; Candida boidinii; Candida sorboxylosa; Candida succiphila; Brettanomyces bruxellensis; Komagataella pastoris; Kuraishia capsulata; Ogataea methanolica; Ogataea parapolymorpha; Ogataea polymorpha; Pichia membranifaciens; Ogataea henricii; Ambrosiozyma ambrosiae; Citeromyces matritensis; Ambrosiozyma vanderkliftii; Brettanomyces custersianus; Komagataella populi; Saturnispora hagleri; Saturnispora mendoncae; Saturnispora saitoi; Saturnispora serradocipensis; Saturnispora silvae; Saturnispora zaruensis; Pichia occidentalis; Pichia norvegensis; Pichia nakasei; Pichia kudriavzevii; Pichia heedii; Pichia exigua; Martiniozyma abiesophila; Ogataea nitratoaversa; Ogataea populialbae; Ogataea zsoltii; Ogataea trehalophila; Ogataea trehaloabstinens; Ogataea ramenticola; Ogataea pini; Ogataea pilisensis; Ogataea philodendri; Ogataea glucozyma; Ogataea kodamae; Ogataea methylivora; Ogataea minuta; Ogataea naganishii; Ogataea nonfermentans; Kuraishia ogatae; Kuraishia molischiana; Komagataella pseudopastoris; Ambrosiozyma oregonensis; Ambrosiozyma philentoma; Citeromyces hawaiiensis; Citeromyces siamensis; Ambrosiozyma maleeae; Ambrosiozyma pseudovanderkliftii; Pichia terricola; Saturnispora dispora; Kregervanrija delftensis; Kregervanrija fluxuum. These models are available in the zip file. To cite BioModels, please use: V Chelliah et al; BioModels: ten-year anniversary. Nucleic Acids Res 2015; 43 (D1): D542-D548. To the extent possible under law, all copyright and related or neighbouring rights to this encoded model have been dedicated to the public domain worldwide. Please refer to MIT License for more information.

SUBMITTER: feiran

PROVIDER: MODEL2109130009 | BioModels | 2021-11-01

REPOSITORIES: BioModels

ACCESS DATA

Publications

Characterization and gene cloning of 1,3-beta-D-glucan synthase from Saccharomyces cerevisiae.

Inoue S B SB Takewaki N N Takasuka T T Mio T T Adachi M M Fujii Y Y Miyamoto C C Arisawa M M Furuichi Y Y Watanabe T T

European journal of biochemistry 19950801 3

1,3-beta-D-Glucan synthase of Saccharomyces cerevisiae was solubilized and purified up to 700-fold by product entrapment. The specific activity of the partially purified enzyme was around 4 mumol glucose incorporated.min-1.mg protein-1. In SDS/PAGE, enrichment of a 200-kDa protein was clearly observed in parallel with the increase in specific activity. mAbs that could immunoprecipitate the 1,3-beta-D-glucan synthase activity were isolated, and some of them also recognized this 200-kDa protein in ...[more]

PMID: 7649185

Publication: 1/343

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Project description:This is genome-scale metabolic model of Candida albicans as the representative yeast species for the clade CUG-Ser1. This model was generated through homology search using a fungal pan-GEM largely based on Yeast8 for Saccharomyces cerevisiae, in addition to manual curation. This model has been produced by the Yeast-Species-GEMs project from Sysbio (www.sysbio.se). This is model version 1.0.0 accompanying the publication (DOI: 10.15252/msb.202110427), currently hosted on BioModels Database and identified by MODEL2109130014. Further curations of this model will be tracked in the GitHub repository: https://github.com/SysBioChalmers/Yeast-Species-GEMs Models for species of the same clade includes: Babjeviella inositovora; Candida albicans; Candida auris; Candida carpophila; Candida dubliniensis; Hyphopichia homilentoma; Candida intermedia; Candida orthopsilosis; Candida parapsilosis; Candida sojae; Suhomyces tanzawaensis; Yamadazyma tenuis; Candida tropicalis; Clavispora lusitaniae; Debaryomyces hansenii; Hyphopichia burtonii; Lodderomyces elongisporus; Metschnikowia aberdeeniae; Metschnikowia arizonensis; Metschnikowia bicuspidata var. bicuspidata; Metschnikowia borealis; Metschnikowia bowlesiae; Metschnikowia cerradonensis; Metschnikowia continentalis; Metschnikowia dekortorum; Metschnikowia drakensbergensis; Metschnikowia hamakuensis; Metschnikowia hawaiiensis; Metschnikowia hibisci; Metschnikowia ipomoeae; Metschnikowia kamakouana; Metschnikowia kipukae; Metschnikowia lochheadii; Metschnikowia matae var. matae; Metschnikowia matae var. maris; Metschnikowia mauinuiana; Metschnikowia proteae; Metschnikowia santaceciliae; Metschnikowia shivogae; Metschnikowia similis; Meyerozyma guilliermondii; Millerozyma acaciae; Priceomyces haplophilus; Scheffersomyces lignosus; Scheffersomyces stipitis; Spathaspora arborariae; Spathaspora girioi; Spathaspora gorwiae; Spathaspora hagerdaliae; Spathaspora passalidarum; Wickerhamia fluorescens; Priceomyces medius; Candida athensensis; Candida schatavii; Candida restingae; Aciculoconidium aculeatum; Kodamaea laetipori; Danielozyma ontarioensis; Candida oregonensis; Candida fructus; Candida corydali; Cephaloascus albidus; Cephaloascus fragrans; Suhomyces pyralidae; Suhomyces canberraensis; Suhomyces emberorum; Teunomyces kruisii; Teunomyces gatunensis; Teunomyces cretensis; Yamadazyma nakazawae; Priceomyces carsonii; Priceomyces castillae; Candida fragi; Hyphopichia heimii; Candida blattae; Yamadazyma philogaea; Yamadazyma scolyti; Meyerozyma caribbica; Kurtzmaniella cleridarum; Kodamaea ohmeri; Candida rhagii; Candida gotoi; Candida heveicola; Debaryomyces prosopidis; Debaryomyces nepalensis; Debaryomyces maramus; Candida hawaiiana; Debaryomyces subglobosus; Debaryomyces fabryi; Candida tammaniensis; Candida wancherniae; Candida ascalaphidarum; Candida golubevii; Candida gorgasii. These models are available in the zip file. To cite BioModels, please use: V Chelliah et al; BioModels: ten-year anniversary. Nucleic Acids Res 2015; 43 (D1): D542-D548. To the extent possible under law, all copyright and related or neighbouring rights to this encoded model have been dedicated to the public domain worldwide. Please refer to MIT License for more information.

Project description:This is genome-scale metabolic model of Saccharomyces cerevisiae as the representative yeast species for the clade Saccharomycetaceae. This model was generated through homology search using a fungal pan-GEM largely based on Yeast8 for Saccharomyces cerevisiae, in addition to manual curation. This model has been produced by the Yeast-Species-GEMs project from Sysbio (www.sysbio.se). This is model version 1.0.0 accompanying the publication (DOI: 10.15252/msb.202110427), currently hosted on BioModels Database and identified by MODEL2109130010. Further curations of this model will be tracked in the GitHub repository: https://github.com/SysBioChalmers/Yeast-Species-GEMs Models for species of the same clade includes: Ashbya aceri; Candida glabrata; Eremothecium coryli; Eremothecium cymbalariae; Eremothecium gossypii; Eremothecium sinecaudum; Kazachstania africana; Kazachstania naganishii; Kluyveromyces lactis; Kluyveromyces marxianus; Lachancea cidri; Lachancea dasiensis; Lachancea fantastica nom. nud.; Lachancea fermentati; Lachancea kluyveri; Lachancea lanzarotensis; Lachancea meyersii; Lachancea mirantina; Lachancea nothofagi; Lachancea quebecensis; Lachancea thermotolerans; Lachancea waltii; Nakaseomyces bacillisporus; Candida bracarensis; Candida castellii; Nakaseomyces delphensis; Candida nivariensis; Naumovozyma castellii; Naumovozyma dairenensis; Saccharomyces arboricola; Saccharomyces cerevisiae; Saccharomyces eubayanus; Saccharomyces kudriavzevii; Saccharomyces mikatae; Saccharomyces paradoxus; Saccharomyces uvarum; Tetrapisispora blattae; Tetrapisispora phaffii; Torulaspora delbrueckii; Vanderwaltozyma polyspora; Zygosaccharomyces bailii; Zygosaccharomyces rouxii; Kazachstania martiniae; Kazachstania unispora; Kazachstania turicensis; Kazachstania bromeliacearum; Kazachstania siamensis; Kazachstania taianensis; Kazachstania intestinalis; Kazachstania rosinii; Kazachstania transvaalensis; Kazachstania spencerorum; Kazachstania viticola; Kazachstania solicola; Kazachstania kunashirensis; Kazachstania aerobia; Kazachstania yakushimaensis; Torulaspora franciscae; Zygotorulaspora mrakii; Kluyveromyces aestuarii; Kluyveromyces dobzhanskii; Zygotorulaspora florentina; Zygosaccharomyces kombuchaensis; Zygosaccharomyces bisporus; Tetrapisispora fleetii; Tetrapisispora iriomotensis; Tetrapisispora namnaonensis; Torulaspora pretoriensis; Yueomyces sinensis; Torulaspora microellipsoides; Torulaspora maleeae. These models are available in the zip file. To cite BioModels, please use: V Chelliah et al; BioModels: ten-year anniversary. Nucleic Acids Res 2015; 43 (D1): D542-D548. To the extent possible under law, all copyright and related or neighbouring rights to this encoded model have been dedicated to the public domain worldwide. Please refer to MIT License for more information.

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Dataset Information

Lu2021-Genome scale metabolic models for yeast species of clade Pichiaceae

Publications

Characterization and gene cloning of 1,3-beta-D-glucan synthase from Saccharomyces cerevisiae.

Similar Datasets

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