Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

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Human shSIRT6 TNF-alpha timecourse


ABSTRACT: We established HeLa cell lines stably expressing a short hairpin RNA against SIRT6 (S6 sh2), and then completed genome-wide microarray analysis in shSIRT6 knock-down and control pSR HeLa cells. Prior to RNA extraction, HeLa cells were treated with TNF-alpha (5 ng/ml) for the indicated times. Total RNA was extracted with TRIzol (Invitrogen) and amplified with Ambion MessageAmp RNA Amplification kit. Amplified human Universal Reference RNA (Stratagene) was used as reference RNA for analysis. Construction and array hybridization of human cDNA microarrays were performed as previously described (Perou et al., 2000). Groups of assays that are related as part of a time series. Compound Based Treatment: 5 ng/ml TNF-alpha Keywords: time_series_design Computed

ORGANISM(S): Homo sapiens

SUBMITTER: Tatiparthi Reddy 

PROVIDER: E-GEOD-13206 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Publications

SIRT6 links histone H3 lysine 9 deacetylation to NF-kappaB-dependent gene expression and organismal life span.

Kawahara Tiara L A TL   Michishita Eriko E   Adler Adam S AS   Damian Mara M   Berber Elisabeth E   Lin Meihong M   McCord Ron A RA   Ongaigui Kristine C L KC   Boxer Lisa D LD   Chang Howard Y HY   Chua Katrin F KF  

Cell 20090101 1


Members of the sirtuin (SIRT) family of NAD-dependent deacetylases promote longevity in multiple organisms. Deficiency of mammalian SIRT6 leads to shortened life span and an aging-like phenotype in mice, but the underlying molecular mechanisms are unclear. Here we show that SIRT6 functions at chromatin to attenuate NF-kappaB signaling. SIRT6 interacts with the NF-kappaB RELA subunit and deacetylates histone H3 lysine 9 (H3K9) at NF-kappaB target gene promoters. In SIRT6-deficient cells, hyperace  ...[more]

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