Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

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Transcription profiling of human fat biopsies from subcutaneous adipose tissue from unrelated individuals - a systems genetics approach implicates USF1, FADS3 and other causal candidate genes for familial combined hyperlipidemia


ABSTRACT: Assessment of mRNA expression levels in fat biopsies from subcutaneous adipose tissue from unrelated individuals. Experiment Overall Design: Subcutaneous adipose tissue from 70 unrelated individuals.

ORGANISM(S): Homo sapiens

SUBMITTER: Christopher Plaisier 

PROVIDER: E-GEOD-17170 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Publications

A systems genetics approach implicates USF1, FADS3, and other causal candidate genes for familial combined hyperlipidemia.

Plaisier Christopher L CL   Horvath Steve S   Huertas-Vazquez Adriana A   Cruz-Bautista Ivette I   Herrera Miguel F MF   Tusie-Luna Teresa T   Aguilar-Salinas Carlos C   Pajukanta Päivi P  

PLoS genetics 20090911 9


We hypothesized that a common SNP in the 3' untranslated region of the upstream transcription factor 1 (USF1), rs3737787, may affect lipid traits by influencing gene expression levels, and we investigated this possibility utilizing the Mexican population, which has a high predisposition to dyslipidemia. We first associated rs3737787 genotypes in Mexican Familial Combined Hyperlipidemia (FCHL) case/control fat biopsies, with global expression patterns. To identify sets of co-expressed genes co-re  ...[more]

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