Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

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The dikaryon formation (mating) transcriptome of the basidomycete fungus Coprinopsis cinerea (Coprinus cinereus)

ABSTRACT: Mating compatibility in C. cinerea is controlled by two loci, A and B. Following fusion of undifferentiated hyphal cells, a complex program is initiated which results in the maintenance of one nucleus from each parent in every cell (the dikaryon). We identified downstream targets of the A locus (A on), the B locus (B on), and both loci (Aon Bon) using strains in which the two pathways are activated separately, and a dikaryotic strain. keywords: Cell type comparison Four biological replicate samples of each experimental strain were taken. Labelled cDNA was hybridized to arrays in a 2 channel reaction. The reference sample was an unmated monokaryotic strain.

ORGANISM(S): Coprinopsis cinerea

SUBMITTER: Claire Burns 

PROVIDER: E-GEOD-20628 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus).

Stajich Jason E JE   Wilke Sarah K SK   Ahrén Dag D   Au Chun Hang CH   Birren Bruce W BW   Borodovsky Mark M   Burns Claire C   Canbäck Björn B   Casselton Lorna A LA   Cheng C K CK   Deng Jixin J   Dietrich Fred S FS   Fargo David C DC   Farman Mark L ML   Gathman Allen C AC   Goldberg Jonathan J   Guigó Roderic R   Hoegger Patrick J PJ   Hooker James B JB   Huggins Ashleigh A   James Timothy Y TY   Kamada Takashi T   Kilaru Sreedhar S   Kodira Chinnapa C   Kües Ursula U   Kupfer Doris D   Kwan H S HS   Lomsadze Alexandre A   Li Weixi W   Lilly Walt W WW   Ma Li-Jun LJ   Mackey Aaron J AJ   Manning Gerard G   Martin Francis F   Muraguchi Hajime H   Natvig Donald O DO   Palmerini Heather H   Ramesh Marilee A MA   Rehmeyer Cathy J CJ   Roe Bruce A BA   Shenoy Narmada N   Stanke Mario M   Ter-Hovhannisyan Vardges V   Tunlid Anders A   Velagapudi Rajesh R   Vision Todd J TJ   Zeng Qiandong Q   Zolan Miriam E ME   Pukkila Patricia J PJ  

Proceedings of the National Academy of Sciences of the United States of America 20100614 26

The mushroom Coprinopsis cinerea is a classic experimental model for multicellular development in fungi because it grows on defined media, completes its life cycle in 2 weeks, produces some 10(8) synchronized meiocytes, and can be manipulated at all stages in development by mutation and transformation. The 37-megabase genome of C. cinerea was sequenced and assembled into 13 chromosomes. Meiotic recombination rates vary greatly along the chromosomes, and retrotransposons are absent in large regio  ...[more]

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