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Poplar tissue types 2

ABSTRACT: Global gene expression pattern of phloem and xylem tissue were determined using a Nimblegen microarray based on JGI v1.1 gene models. Xylem tissue from both Populus trichocarpa Nisqually-1 and Populus tremula X Populus alba hybrid were used in the study. Xylem tissue: Three biological replicates were hybridized to three arrays Phloem tissue: Two biological replicates were hybridized to two arrays

ORGANISM(S): Populus trichocarpa

SUBMITTER: palitha dharmawardhana

PROVIDER: E-GEOD-21485 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Poplar tissue types 2

Project description:Global gene expression pattern of phloem and xylem tissue were determined using a Nimblegen microarray based on JGI v1.1 gene models. Xylem tissue from both Populus trichocarpa Nisqually-1 and Populus tremula X Populus alba hybrid were used in the study.

2010-08-01 | GSE21485 | GEO

Poplar tissue types 1

Project description:Global gene expression pattern of different poplar tissue types were determined using a Nimblegen microarray based on JGI v1.1 gene models. All tissue except reproductive tissue were obtained from the same clone used for the poplar genome sequencing project (Populus trichocarpa Nisqually-1). Reproductive tissue were from wild Populus trichocarpa trees. Replicates: Two biological replicates per tissue type were hybridized to two arrays

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Poplar tissue types 1

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Whole Genome Bisulfite Sequencing in wild type plants, and two RNAi transgenic lines, KD2 and KD5.

Project description:We report the application of Whole Genome Bisulfite Sequencing to identify differentially methylated regions (DMR) in two RNAi transgenic lines, with dowregulated expression of the demeter-like gene PtaDML10, in comparisson to wild-type plants of Populus tremula x Populus alba plants.

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Effect of Methyl jasmonate of the Poplar root transcriptome

Project description:Illumina HiSeq technology was used to generate mRNA profiles from Populus tremula x alba INRA 717-1B4 roots treated with Methyl jasmonate. Samples were harvested after two weeks either from untreated control roots or from Methyl jasmonate treated roots. Paired-end (2X100bp) reads were generated and aligned to the Populus trichocarpa (http://www.phytozome.net/poplar.php) using CLC Genomics Workbench 6. mRNA profiles from Populus tremula x alba INRA 717-1B4 roots treated with Methyl jasmonate as well as from control roots were generated by paired-end (2X100bp) Illumina HiSeq sequencing. Four samples were sequenced per lane, two biological replicates per treatment.

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