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Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

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Dynamic transcriptomic profiles of zebrafish gills in response to zinc depletion

ABSTRACT: Zinc deficiency is detrimental to organisms highlighting its role as an essential micronutrient contributing to numerous biological processes. To investigate the underlying molecular events invoked by zinc depletion we performed a temporal analysis of transcriptome changes observed within zebrafish gill. This tissue represents a model system for studying ion absorption across polarised cells as it provides a major pathway for fish to acquire zinc directly from water whilst sharing a conserved zinc transporting system with mammals. Zebrafish were treated with either zinc-depleted (water = 2.61 μg L-1; diet = 26 mg kg-1) or zinc-adequate (water = 16.3 μg L-1; diet = 233 mg kg-1) conditions for two weeks. Gill samples were collected at five time points and transcriptome changes analysed in quintuplicate using a 16K oligonucleotide array. Global transcript levels were measured in zebrafish gills using a oligonucleotide array either zinc-depleted or zinc-adequate diet. Gill samples were collected at five time points and transcriptome changes analysed in quintuplicate using a 16K oligonucleotide array

ORGANISM(S): Danio rerio

SUBMITTER: Peter Kille

PROVIDER: E-GEOD-21894 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Dynamic transcriptomic profiles of zebrafish gills in response to zinc supplementation.

Project description:Dietary zinc is routinely supplemented to promote growth, boost the immune system, protect against diabetes or aid recovery from diarrhoea. We exploited the zebrafish (Danio rerio) gill as a unique vertebrate ion transporting epithelium model to study the time-dependent regulatory networks of gene-expression leading to homeostatic control during zinc supplementation. This organ forms a conduit for zinc uptake whilst exhibiting conservation of zinc trafficking components. Fish were maintained with zinc supplemented water (4.0 uM) and diet (2023 mg zinc kg-1) or in un-amended water and diet, containing Zn2+ at 0.25 µM and 233 mg zinc kg-1 respectively. Gill tissues were harvested at five time points (8 hours to 14 days) and transcriptome changes analysed in quintuplicate using a 16K microarray. Global transcript levels were measured in zebrafish gills using a oligonucleotide array either zinc-adequate or zinc-supplemented diet. Gill samples were collected at five time points and transcriptome changes analysed in quintuplicate using a 16K oligonucleotide array

2010-05-20 | E-GEOD-21907 | biostudies-arrayexpress

Dynamic transcriptomic profiles of zebrafish gills in response to zinc

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Dynamic transcriptomic profiles of zebrafish gills in response to zinc supplementation.

2010-05-20 | GSE21907 | GEO

Dynamic transcriptomic profiles of zebrafish gills in response to zinc depletion

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