Expression profiling of genes involved in dedifferentiation and redifferentiation during somatic embryogenesis in cotton

ABSTRACT: We used a next-generation sequencing approach, Illumina Digital Gene Expression (DGE) technology, to Genome-wide profiling of gene expression during cotton SE. As a result, 5,076 differentially expressed genes were identified during cotton SE. Expression profile and functional assignments of these genes indicated significant transcriptional complexity during this process. Transcription factor-encoding genes were found to be differentially regulated during SE. The complex pathways of auxin abundance, transport and response with differentially regulated genes revealed that the auxin-related transcripts belonged to IAA biosynthesis, indole-3-butyric acid (IBA) metabolism, IAA conjugate metabolism, auxin transport, auxin-responsive protein / indoleacetic acid-induced protein (Aux/IAA), auxin r

ORGANISM(S): Gossypium hirsutum

SUBMITTER: Xiyan Yang 

PROVIDER: E-GEOD-38209 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress