De novo characterization of foliar transcriptome in Chenopodium amaranticolor and analysis of the differentially expressed genes during the stage of hypersensative response induced by distinct plant viruses

ABSTRACT: The hypersensitive response (HR) system of Chenopodium spp. confers broad-spectrum virus resistance. However, scant knowledge exists at the genomic level for Chenopodium, thus impeding the advanced molecular research of this attractive feature. Hence we took advantage of RNA-seq to survey the foliar transcriptome of C. amaranticolor, one Chenopodium species being widely used as laboratory indicator for pathogenic viruses, in order to facilitate the characterization of the HR-type of virus resistance. In a single run, we obtained 39,868,984 reads with 3,588,208,560 bp, which were assembled into 112,453 unigenes (3,848 clusters and 108,605 singletons). BlastX search against the NCBI NR database identified 62,482 sequences with a cut-off E-value above 10-5. Assembled sequences were annotated

ORGANISM(S): Chenopodium amaranticolor

SUBMITTER: WEIMIN LI 

PROVIDER: E-GEOD-38451 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress