Browse
Submit Data
Databases
API
Help

Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Genome-wide maps of chromatin state in ESET+/+ and ESET-/- DP thymocytes

ABSTRACT: We generated genome-wide H3K9me3-state maps of DP thymocytes purified from ESET+/+ and ESET-/- mice by using next generation sequencing. Examination of H3K9 trimethylation in DP thymocytes purified from ESET+/+ and ESET-/- mice.

ORGANISM(S): Mus musculus

SUBMITTER: Takaho Endo

PROVIDER: E-GEOD-73831 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

ACCESS DATA

Json Xml

Shared Molecules

Only show the datasets with similarity scores above: 0.5

Threshold

0.5

Similar Datasets

Genome-wide maps of chromatin state in ESET+/+ and ESET-/- DP thymocytes

Project description:We generated genome-wide H3K9me3-state maps of DP thymocytes purified from ESET+/+ and ESET-/- mice by using next generation sequencing.

2016-01-01 | GSE73831 | GEO

Genome-wide analysis in ESET+/+ and ESET-/- thymocytes

Project description:Analysis of ESET deficient thymocytes at gene expression level. Each thymocyte developmental stage (preselected DP, postselected DP and CD4SP) was analysed. Total RNA obtained from isolated subpopulations of thymocytes from ESET+/+ and ESET-/- mice were analysed.

2016-07-03 | E-GEOD-73951 | biostudies-arrayexpress

Genome-wide analysis in ESET+/+ and ESET-/- thymocytes

Project description:Analysis of ESET deficient thymocytes at gene expression level. Each thymocyte developmental stage (preselected DP, postselected DP and CD4SP) was analysed.

2016-01-01 | GSE73951 | GEO

Gene expression profile of murine Flvcr-deleted and control CD4+CD8+ double-positive (DP) thymocytes

Project description:Genomewide microaarray analysis of murine DP thymocytes to determine the genes whose expression was altered by FLVCR loss Gene signatures from Flvcr+/+ DP thymocytes was compared to gene signatures from Flvcr-/- DP thymocytes Total RNA obtained from sort-purified Flvcr-/- and Flvcr+/+ DP thymocytes

2015-02-17 | E-GEOD-50202 | biostudies-arrayexpress

murine DP thymocytes transcriptome

Project description:murine DP thymocytes transcriptome

| PRJNA804863 | ENA

Effect of c-Myb deficiency on pre-selection DP thymocytes

Project description:Comparing the mRNA expression profiles of c-Myb deficient and c-Myb sufficient Tcra-/- DP thymocytes. Results provide insight into the role of c-Myb in the regulation of survival and differentiation during the pre-selection DP stage where c-Myb expression is abundant during T cell development. DP thymocytes were purified from four c-Myb deficient and four c-Myb sufficient mice over magnetic columns. RNA from each biological replicate was individually hybridized onto a total of eight MOE430 2.0 Chips.

2010-01-21 | E-GEOD-19528 | biostudies-arrayexpress

Gene expression profile of murine Flvcr-deleted and control CD4+CD8+ double-positive (DP) thymocytes

2015-02-17 | GSE50202 | GEO

Expression profile of bcl11b-/- preselected DP thymocytes

Project description:Review on the role of Bcl11b in thymus and periphery and impact on diseases RNA was extracted from DP thymocytes of bcl11bf/fCd4cre/tcra-/- and tcra-/- mice. Tcra-/- mice only have preselected DP thymocytes. Such mice were used to determine the role of Bcl11b before selection, considering the defective positive selection in bcl11bf/fcd4cre mice. RNA was isolated and submitted for library generation and microarray analysis to determine expression profile of bcl11b-/- preselected DP thymocytes.

2014-04-12 | E-GEOD-56714 | biostudies-arrayexpress

Mapping of H2A.Z nucleosomes in CD4/CD8 DP thymocytes

Project description:H2A.Z ChIP-Seq in CD4/CD8 DP thymocytes

2017-02-07 | GSE87529 | GEO

Mus musculus

Project description:Genome-wide maps of chromatin state in ESET+/+ and ESET-/- DP thymocytes

| PRJNA298080 | ENA