Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

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Transcriptional effects of I-PpoI induced DNA double strand breaks in mouse lymphocytes


ABSTRACT: DNA double-strand breaks (DSBs) and their repair can cause extensive epigenetic changes. As a result, DSBs have been proposed to promote transcriptional and, ultimately, physiological dysfunction via both cell-intrinsic and cell-non-autonomous pathways. Studying the consequences of DSBs in higher organisms has, however, been hindered by a scarcity of tools for controlled DSB induction. Using a mouse model for both tissue-specific and temporally controlled DSB formation, we investigated the transcriptional response to break repair. Transcriptional profiling of lymphocytes in spleen and thymus by RNA-Seq, with and without I-PpoI knock-in.

ORGANISM(S): Mus musculus

SUBMITTER: David Sturgill 

PROVIDER: E-GEOD-74855 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Publications

Controlled DNA double-strand break induction in mice reveals post-damage transcriptome stability.

Kim Jeongkyu J   Sturgill David D   Tran Andy D AD   Sinclair David A DA   Oberdoerffer Philipp P  

Nucleic acids research 20151219 7


DNA double-strand breaks (DSBs) and their repair can cause extensive epigenetic changes. As a result, DSBs have been proposed to promote transcriptional and, ultimately, physiological dysfunction via both cell-intrinsic and cell-non-autonomous pathways. Studying the consequences of DSBs in higher organisms has, however, been hindered by a scarcity of tools for controlled DSB induction. Here, we describe a mouse model that allows for both tissue-specific and temporally controlled DSB formation at  ...[more]

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