Assessing concordance of drug-induced transcriptional response in rodent liver and cultured hepatocytes

ABSTRACT: The effect of drugs, disease and other perturbations on mRNA levels are studied using gene expression microarrays or RNA-seq, with the goal of understanding molecular effects arising from the perturbation. Previous comparisons of reproducibility across laboratories have been limited in scale and focused on a single model. The use of model systems, such as cultured primary cells or cancer cell lines, assumes that mechanistic insights derived with would have been observed via in vivo studies. We examined the concordance of compound-induced transcriptional changes using data from several sources: rat liver and rat primary hepatocytes (RPH) from Drug Matrix (DM) and open TG-GATEs (TG), primary human hepatocytes (HPH) from TG, and mouse liver / HepG2 results from the Gene Expression Omnibus

ORGANISM(S): Rattus norvegicus

SUBMITTER: Jeffrey Sutherland 

PROVIDER: E-GEOD-74903 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress