Browse
Submit Data
Databases
API
Help

Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

19 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Chromatin immunoprecipitation of Arabidopsis nrpd1a-4_nrpd1b-11 double mutant and in the wild type after immunprecipitation of H3K4me2

ABSTRACT: Chromatin immunoprecipitation and hybridization to a chromosome-wide DNA tiling array (ChIP-chip)was performed to compare the distribution of H3K4me2 in nrpd1a-4_nrpd1b-11 double mutant and in the wild type. Experiments were done using two independent biological replicates.

ORGANISM(S): Arabidopsis thaliana

SUBMITTER: Vincent Colot

PROVIDER: E-MEXP-1732 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

ACCESS DATA

Json Xml

Similar Datasets

Chromatin immunoprecipitation of Arabidopsis to perform a chromosome-wide comparison of H3K9me2 distribution between nrpd1a-4_nrpd1b-11 and wild type plants

Project description:Chromatin immunoprecipitation and hybridization to a chromosome-wide DNA tiling array (ChIP-chip)was performed to compare the distribution pattern of H3K9me2 between nrpd1a-4_nrpd1b-11 and wild type. Experiments were done using two independent biological replicates.<br>

2009-07-24 | E-MEXP-1727 | biostudies-arrayexpress

Chromatin immunoprecipitation of Arabidopsis seedlings to identify targets of TERMINAL FLOWER 2/LIKE HETEROCHROMATIN PROTEIN 1 and H3K27me3, H3K9me2 and H3K9me3

Project description:Chromatin immunoprecipitation and hybridization to a chromosome-wide DNA tiling array (ChIP-chip)was performed to identify the targets of the chromatin protein TERMINAL FLOWER 2/LIKE HETEROCHROMATIN PROTEIN 1. Epigenomic profiling was also carried out for three histone H3 modifications: H3K27me3, H3K9me2 and H3K9me3. Experiments were done using two independent biological replicates.

2007-04-17 | E-MEXP-951 | biostudies-arrayexpress

Chromatin states in the Arabidopsis seedlings

Project description:We investigated the chromatin modifications H3K4me3 and H3K27me3 in the A. thaliana seedlings. Samples were collected in two biological replications.

2017-05-21 | E-MTAB-4680 | biostudies-arrayexpress

Transcription profiling of human mesenchymal stem cell osteogenic differentiation

Project description:full human genome expression microarrays were used to analysis of gene expression profiles upon the induction of MSC osteogenic differentiation.

2009-05-31 | E-MEXP-2131 | biostudies-arrayexpress

Transcription profiling of S. aureus isolates from different locations and associated with different diseases

Project description:Hybridisation of reference strains to the VirEp Staphylococcus aureus microarray, and characterisation of different S. aureus isolates from different locations and associated with different diseases.

2008-05-01 | E-MEXP-1548 | biostudies-arrayexpress

Transcription profiling of Mycobacterium tuberculosis H37Rv wild type and deletion mutants for mce3R gene to investigate the expression of a regulon involved in lipid metabolism

Project description:Four cultures (four biological replicates) of each of two strains, wild type H37Rv and a deletion mutant for mce3R gene, were grown in in Middlebrook 7H9 medium supplemented with 0.05% Tween 80, or Middlebrook 7H11, supplemented with albumin 0.5%, dextrose 0.4%, and 0.5% glycerol (M7H9-AD-G). <br>Total RNA was extracted from each culture, dyed with Cy5 and hybridised onto two separated microarrays (technical duplicates). <br>In the second channel a mix of genomic DNA from strains H37Rv and AF2122 was dyed with CY3 and used as a common control in all the microarrays.<br>An statistical analysis of microarray data was performed to detect genes with differential expression between genotypes.

2009-06-17 | E-MEXP-2202 | biostudies-arrayexpress

Comparative genomic hybridization of Bordetella pertussis clinical isoltates circultating in Senegal

Project description:Genomic content of Bordetella pertussis clinical isolates circulating in Senegal

2009-01-08 | E-MEXP-1674 | biostudies-arrayexpress

Comparative genomic hybridization of Bordetella pertussis isolates collected in France in 2007 and a reference strain

Project description:Genomic content of Bortelella pertussis clinical isolates collected in 2007 in France using 3 isolates and one reference strain

2009-10-20 | E-MEXP-1871 | biostudies-arrayexpress

ECBiG PlasTi-microarray CSH validation

Project description:Experiment evaluating aplicability of PlasTi-microarray for cross-species hybridization studies. PlasTi-microarray is a tiling oligonucleotide microarray originally designed for cucumber plastome analysis.Chloroplast RNA from Arabidopsis, tomato and spinach leaves was extracted, labelled and hybridized to PlasTi-microarray with the cucumber samples labelled with the second dye as a control. For each species, one biological sample and one technical replicate (labelled in a dye-swap orientation) were analyzed, resulting in two microarray hybridizations per species and six microarrays (a-f) in total.

2011-05-27 | E-MEXP-3220 | biostudies-arrayexpress

Bordetella bronchiseptica RB50 iron limitation 2

Project description:Bordetella bronchiseptica RB50 was shifted from iron replete to either iron depleted or iron replete media, and samples were taken post shift for transcriptional profiling

2011-09-08 | E-MEXP-3076 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data