Browse
Submit Data
Databases
API
Help

Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

16 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Borriss_FZB42_pilot experiment

ABSTRACT: Transcriptional profiling by array of Bacillus amyloliquefaciens FZB42 at log phase(OD600=1.0) and early stationary phase(OD600=3.0) after maize root exudate treatment of three concentrations(0.25mg/ml,0.50mg/ml,1.00mg/ml).

ORGANISM(S): Bacillus amyloliquefaciens

SUBMITTER: BEN FAN

PROVIDER: E-MEXP-3554 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

ACCESS DATA

Json Xml

Similar Datasets

Borriss_FZB42_Root Exudates_OD1.0

Project description:Transcriptional profiling by array of Bacillus amyloliquefaciens strain FZB42 after root exudate treatment (0.25 g/L) at OD600=1.0<br><br>

2012-04-15 | E-MEXP-3550 | biostudies-arrayexpress

Bacillus amyloliquefaciens FZB42 maize root exudate treatment

Project description:The transcriptomic response of Bacillus amyloliquefaciens FZB42 to maize root exudates at OD600=3.0. This is a comprehensive analysis using the data of six microarray experiments (Exp1-2-3 and ExpABC respectively, 18 hybridization in total).

2011-11-01 | E-MEXP-3421 | biostudies-arrayexpress

Borriss_FZB42_IE-RE

Project description:Transcription profiling by array of Bacillus amyloliquefaciens strain FZB42 after interaction exudates (IE) treatment, at OD600=1.0 and at OD600=1.0 respectively. IE was the root exudates prepared from maize plants growing with FZB42. The reference was treated with the root exudates (RE), prepared from maize plants grown in an axenic system.

2012-04-15 | E-MEXP-3553 | biostudies-arrayexpress

maize seed exudates - B. amyloliquefaciens FZB42

Project description:The effect of maize seed (Zea mays L. var. Surprise) exudates on Bacillus amyloliquefaciens FZB42 cultures grown to OD600 = 1.0 or 3.0 was tested against a negative seed exudate control sample.

2013-03-09 | E-MEXP-3788 | biostudies-arrayexpress

Borriss_FZB42_soil extract

Project description:Transcription profiling by array of Bacillus amyloliquefaciens strain FZB42 after soil extract treatment, at OD600=1.0 and OD600=3.0 respectively.

2012-04-15 | E-MEXP-3551 | biostudies-arrayexpress

Bacillus amyloliquefaciens FZB42 K-depleted root exudates

Project description:Transcription profiles of Bacillus amyloliquefacs FZB42 (cultured to an optical densit of 1.0 or 3.0) in response to root exudates from nutrient-sufficient maize plants and plants starved of nitrogen, phosphorus, potassium or iron.

2013-03-11 | E-MEXP-3795 | biostudies-arrayexpress

Transcription profiling of Rhizobium leguminosarum grown in minimal medium with or without the addition of salt

Project description:Grow strain 3841 on AMS minimal medium with glucose 10mM and ammonium chloride 10 mM and compare it to the same growth conditions but plus 100 mM NaCl

2007-03-17 | E-MEXP-1041 | biostudies-arrayexpress

Ptp107 versus wild type Rlv3841

Project description:Strain PtsP107 has a Tn5 insertion in PtsP and it was grown on glucose/ ammonia minimal medium and gene expression compared to the wild type Rhizobium leguminosarum biovar viciae strain Rlv3841 grown on the same medium.

2011-09-23 | E-MEXP-3381 | biostudies-arrayexpress

Transcription profiling of free-living cultures of Rhizobium leguminosarum strain 3841 wild type vs bacA mutant grown on AMS with glucose and ammonia

Project description:Gene expression in wildtype Rhizobium leguminosarum biovar viciae strain 3841 was comapred to a bacA mutant. All cultures were grown in the laboratory on AMS with glucose and ammonia as carbon and nitrogen sources.

2009-01-06 | E-MEXP-1965 | biostudies-arrayexpress

Transcription profiling of Rhizobium leguminosarum biovar viciae grown on acetoacetate ammonia versus glucose ammonia

Project description:Rhizobium leguminosarum biovar viciae strain 3841 was grown on acetate ammonia AMS and glucose ammonia AMS and gene expression between the two cultures compared

2009-06-11 | E-MEXP-1964 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data