Browse
Submit Data
Databases
API
Help

Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

15 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

RNA-seq of Drosophila plasmatocyte mosaics which lack PRC2/H3K27me3

ABSTRACT: Genetic mosaics were induced in 3rd instar larvae by heatshock to generate H3K27R mutants, Su(z)12 mutants or E(z) mutants

INSTRUMENT(S): Illumina HiSeq 3000

ORGANISM(S): Drosophila melanogaster

SUBMITTER: Robert Streeck

PROVIDER: E-MTAB-10762 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

ACCESS DATA

Json Xml

Similar Datasets

RNA-seq of resting plasmatocytes from Drosophila melanogaster third instar larvae

Project description:Resting plasmatocytes were isolated from 3rd instar larvae and subjected to RNA-seq as comparison to ChIP-seq data

2022-05-31 | E-MTAB-10759 | biostudies-arrayexpress

RNA-seq of plasmatocytes after septic injury

Project description:OrR drosophila 3rd instar larvae were subjected to septic injury with a mixture of E.coli and S.aureus at 3h, 6h and 18h. Plasmatocytes were isolated afterwards and subjected to RNA-seq

2022-05-31 | E-MTAB-10761 | biostudies-arrayexpress

RNA-seq of Hml-SwitchGal4 induced pathway activation in Drosophila plasmatocytes

Project description:Drosophila carrying Hml-SwitchGal4 were crossed to different uas-constructs (uas-eGFP, uas-PGRP-LC, uas-hop, uas-tkvQD). 3rd instar larvae were either kept as control or SwitchGal4 was activated by hormone feeding for 24h. Afterwards plasmatocytes were extracted and subjected to RNA-seq.

2022-05-31 | E-MTAB-10764 | biostudies-arrayexpress

RNA-seq of plasmatocytes after septic injury with trxG-RNAis

Project description:Drosophila plasmatocyes expressed control or trxG RNAis under the plasmatocyte specific Hml promotor. 6h prior to plasmatocyte collection animals were split into control and septic injury groups and treated accordingly. Afterwards plasmatocytes were isolated and polyA RNA was subjected to RNA-seq.

2022-05-31 | E-MTAB-10780 | biostudies-arrayexpress

ChIP-seq of Drosophila melanogaster OregonR plasmatocytes at 6h post septic injury

Project description:Drosophila 3rd instar larvae were subjected to septic injury. After 6h plasmatocytes were isolated, fixed and subjected to ChIP-seq.

2022-05-31 | E-MTAB-10760 | biostudies-arrayexpress

ChIP-seq of Drosophila melanogaster plasmatocytes against various histone modifications

Project description:To identify the presence of different chromatin states in homogeneous primary cells, Drosophila melanogaster plasmatocytes were isolated from 3rd instar larvae and subjected to cross-linked ChIP-seq using antibodies against a range of H3 histone modifications and PolII.

2022-05-31 | E-MTAB-10707 | biostudies-arrayexpress

RNA-seq of haemoless drosophila larvae compared to matching control animals

Project description:Drosophila melanogaster 3rd instar wandering larvae with a genetic construct for hemocyte ablation were collected along with genetically matched non-ablated animals, RNA was extracted from whole animals and used for RNA-seq.

2022-09-14 | E-MTAB-11095 | biostudies-arrayexpress

An ectopic network of transcription factors regulated by Hippo signaling drives growth and invasion of a malignant tumor model

Project description:This SuperSeries is composed of the SubSeries listed below. Refer to individual Series

2016-06-10 | E-GEOD-71354 | biostudies-arrayexpress

RNA expression in Drosophila melanogaster mutants lacking HP1a

Project description:mRNA expression levels were determined by NGS for wildtype larvae as well as for larvae lacking HP1a [Su(var)205^04/Su(var)205^05 transheterozygotes]. RNA samples from wildtype (OR) and HP1a mutant third instar larvae were examined, using duplicate biological samples and Illumina NGS.

2012-09-01 | E-GEOD-39083 | biostudies-arrayexpress

Genome-wide binding of Yki and GAF in embryos and wing imaginal discs [RNA-Seq]

Project description:The Hippo pathway regulates metazoan growth, acting through the transcriptional co-activators Yorkie (in Drosophila) and Yap and Taz (in vertebrates). Much attention has been focused on upstream regulators of Yorkie and its homologues. In contrast, the mechanisms by which they actually promote transcription have remained poorly understood. Genome-wide chromatin binding experiments support extensive functional overlap between Yorkie and GAF. Chromatin binding identifies thousands of Yorkie sites, the majority of which are associated with elevated transcription, based on genome-wide analysis of mRNA and histone H3K4Me3 modification. Our studies establish a molecular basis for transcriptional activation by Yorkie and implicate it as a global regulator of transcriptional activity in Drosophila. This is a dataset generated by the Drosophila Regulatory Elements modENCODE Project led by Kevin P. White at the University of Chicago. This dataset was generated in collaboration with Ken Irvine at HHMI/Rutgers University and Richard S. Mann at Columbia University. It contains RNA-seq data for larval wing imaginal discs.

2013-02-07 | E-GEOD-43129 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data